AMCG00016206


Basic Information

Item Value
gene id AMCG00016206
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12173068 ~ 12205659 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016206
GCAGATGGTACGGGAACAATACTCCTCAACGACACAAGGCACTAGCCTCCCACGCCCGGAGAATCAGTATGTCTACAAAATTGGGATCTATGGCTGGAGGAAGCGTTGTCTGTACCTCTTCGTTCTGCTCATGCTCATCATTTTGGTTGTGAACTTTGCACTGACTATCTGGATCCTGAGAGTCATGTGGTTCAACCCAgaaggAATGGGACTCCTAAGAGTAACGAAAGAAGGGCTTAGACTTGAAGGAGAGTCTGAATTTCTCTTTCCACTCTATGCCAAAGAGATTCACTCCAGAGAGGACTCGTCACTGCTTCTGCACTCCTCTCAAAATGTCACGGTCAACGCCCGGAATTCAGACGGGGACGTGACCGGCCGATTATCAGTAGGTCCGCAAATGGTTGAAGCCCAAGGACAAAGCTTTGAGATTAACTCCAACAGTGGCAAGATGTTGTTCTCTGCAAACGAACAGGAAGTGGTTGTTGGGGCCGACAAGCTCAGAGTGACAGgcCCTGAAGGCGCTCTCTTTGAACACTCTGTAGAAACACCTCTTGTCAAGGCTGAAGCTTTCAAGGACCTAAGGCTCGAGTCTCCCACCCGCTCCCTGAGTCTGGATGCTCCAAAAGGAGTCCACATCAAAGCTCTTGCAGGAAACATAGAGGCCACATCTCAGATGAATATAATGTTGCACACGAGTGAGGGGATGCTGATACTGGACGCCGAAACCGTGCGCCTGCCCAAGTTACCTCAAGGGACGAGAGGCGTGCCAGGGAACTCTCAGGGGCTGTACGAGGTGTGCGTGTGCCCGGACGGAAAACTGTACTTGTCTGTGGCAGGTGTTGGCTCCACTTGCCACGAATACAGCCGGGTCTGCCAGTGAGGCGGGCCGGGATCCCGGCACATTCTCTGGAGGCTTTTTCTGACTGGGAATATCCTTTTTTGTTCCTTCCACTTCTGATCTCTCTACACATGTATGCCCAAAGCATCTTTAAAAAGACTCGCTTTCAACGGAAATTCGTGACAAATGTTGAAGAATTCGCAACagccttttttaaattctttcCCCCAGACTGTTACTATACAAGCCTTCAAGAGAGACCCAAGAGCACAATTATACAGCTTTAAAGGAAACTGCCAGTAAACTAAGCAGCTTTGTCCATATTTGTATGGTTCCAGTGGCAAAacagctttcattttcattaaaaaatactcTGTATACATCATGGAAACAGTTGTATTCTTGACCATAACTAAACAATACTGCAGCTACATTTTTTTCAGATCTTTAACTGACTGTTACCAGCTGCAAGATAACTGTGCCAACCAACATGAAATCTTTTATTAACtctgtttttcctctctgtACACAGTGTCTATAGCTGGTCATGTTTAGCTGGTGACAGCTTCCTTTCTATGCAATCAGTTGATTTTGTCCGTGCAATAACAAACAGCGACtggatttcatttaaaagacCTTCCTTACGTGCATATTAGTGTCCtgtatttgtttgatgtttatttCAGGCAATTCCAAGGGTATATTGACCAGCTTTTTTAAGCAGGAATAAGGTACAATAAGACTAGTTTTATccatgtaatacattttttaaatatatttttaaattttaactaCACTTAAATTAAGCAGAATAAAACTGGTTTCTGTATTAAAGTGATTAGTGACATGTACATTAATATGACAATGCACAAAGCACTAGTCAAGTGGGgctaaaatgtaatgcattcaaTTCTACAATGATTGTCACGTACTGTAGCTTGAGATaggaagtgaaatgaaatggtTCAGACTTACTGGAAACACAGTAGGACTGGAACAACATATAGATTTGAATGGTGGCTCAGTTGATGCAAATCATTGACTCATTGAAAACTAACTATGTTTTCCACCTGAAATGCTAGTTTTGTTACACGTTTGTCACACTGTGCTTAAAACCACACTAACATGTCCAGCTCAAAATAACTGGTCTTCGTATAATATTGATTTTGCTATCATAGAACTTTAGATGATATTTATGTCAATATAATTGAGATATTACACAATTTGTATTGCACTCTTCATTTCTTTTCAAACAACCAACATACTTTGCTAGcatgactttttctttttccatttagtaaacattcacattaaaattgaaaaagtatTGGAAGCTTCATCTTGTTGGAATTGAGGTCTGGATTCCTAAAGCAGGTCCCCCCATATTGTCAACTGATAATAACAAGGATcatcaaataatgtaaatataatacgTTTCACATGAGTCAGAGTAATAACATAATTACAGAAGCACAGGGTCACAATGGTAGGGGTGCAAGATTTATATGTAACATCCCAGTAACCTGTATTACCTTTGCCCATAAAGATTACGCTCAATTCCAGCTGGTCGTAGATTCGGCTAGAgtagattaaaacattaaaataaagtacgTGTCTTGAGACTATTGACTTCTACAAGATATTTGTATGctagtttaaatttaaattaaaccttaattaaatacttttttttttttaaatcagtcgCTCAAGAGTGCCATAATGCTTTCTAACAaaaagatctctctctctctatatatatatatatatatattagttttgtgCCGTATAAATGTTTCGTTTTCATTTAAGGGGGGGAAGTATTTTTGTGCAGAGTATACGTGTTCCCTTTGTATATCGTCACAATCACTCAAACGGCCAGGAGAAACCTTGTTGATGATGAAGGGTGAGGACTCTTATACATCTAATTGAATAgccaatgttaaaaataatacacaaaactaTTTACTAATATTATATTCAAAGACCCAGAGGTCAGAAATGTTCTCTGAATTGTTATTTGAGGAACACTGTACAAACGTTGGGGCAATTTTATGAAATTTCATGAATTTATCAATCTACCTTTGTATGTCTGAATAAAGGGGT

Function

GO: NA

KEGG:

id description
K12564 SGCG; gamma-sarcoglycan

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016206 True 2944 mRNA 0.39 7 12173068 12205659

Neighbor

gene id symbol gene type direction distance location
AMCG00016205 NA coding upstream 63684 12056700 ~ 12109384 (+)
AMCG00016197 pcyt1b,LOC107590340,LOC107721854 coding upstream 325204 11837672 ~ 11847864 (+)
AMCG00016196 NA coding upstream 372272 11796688 ~ 11800796 (+)
AMCG00016198 NA coding upstream 381436 11782180 ~ 11791632 (+)
AMCG00016191 NA coding upstream 408421 11751518 ~ 11764647 (+)
AMCG00016207 NA coding downstream 35984 12241643 ~ 12261142 (+)
AMCG00016215 NA coding downstream 180319 12385978 ~ 12397053 (+)
AMCG00016214 NA coding downstream 195170 12400829 ~ 12407292 (+)
AMCG00016218 NA coding downstream 460524 12666183 ~ 12679044 (+)
AMCG00016220 NA coding downstream 476613 12682272 ~ 12691799 (+)
G11953 NA non-coding upstream 143947 12028299 ~ 12029121 (+)
G11914 NA non-coding upstream 321447 11848285 ~ 11851621 (+)
G11905 NA non-coding upstream 354003 11817004 ~ 11819065 (+)
G11851 NA non-coding upstream 442842 11729600 ~ 11730226 (+)
G11850 sc6a7 non-coding upstream 445645 11726942 ~ 11727423 (+)
G11988 NA non-coding downstream 689 12206348 ~ 12207474 (+)
G12009 NA non-coding downstream 56392 12262051 ~ 12265709 (+)
G12032 NA non-coding downstream 117518 12323177 ~ 12328393 (+)
G12036 NA non-coding downstream 126477 12332136 ~ 12333112 (+)
G12042 NA non-coding downstream 149016 12354675 ~ 12355369 (+)
AMCG00016202 NA other upstream 167116 11992972 ~ 12005952 (+)
G11921 NA other upstream 301333 11868825 ~ 11871735 (+)
AMCG00016174 NA other upstream 1215036 10844127 ~ 10958032 (+)
G11660 NA other upstream 2573912 9598815 ~ 9599156 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other upstream 2581419 9559464 ~ 9591649 (+)
AMCG00016213 NA other downstream 229477 12435136 ~ 12461265 (+)
AMCG00016221 NA other downstream 572565 12778224 ~ 12786899 (+)
AMCG00016241 NA other downstream 1065925 13271584 ~ 13389636 (+)
G12348 NA other downstream 1416220 13621879 ~ 13627711 (+)
G12349 NA other downstream 1425626 13631285 ~ 13631797 (+)

Expression


Co-expression Network