AMCG00016207


Basic Information

Item Value
gene id AMCG00016207
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12241643 ~ 12261142 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016207
ATGGCAGCTGCGGCTGCGGAGATGAAAGGCAGCCCTGCGCGCCGGCTGGGCTTCACACCGCGGAGCAGCAGCGCACAGCCCGCCTCTCAGCCCAGCCCTCGCCAGGCCGGACACTCCGGGGGCGGTGGAAGCAGAAGTGTTTCTCCCGGGAAGAAGGGCGAAGGGAAGCAGAGCTCGTCCTCGCATCCTCCGGGCCGGATCCCGCTCGGACGTGCCGGCGGTCGCGACTCGTACGCCGGGCTCGTCtgctggCGGTTTTGCTGCTGGTCGGCCTTTGATGTGCGTCGCCGATCACCGATCAGATTACAAGGCTTGGATCCCAGCCCTCCTCTTGCCTTTGATCTCCgggcacatttgttttctcgCTCTCTGCCTTTGCGCAATTTCGGAGGCTCGTCTGGAGTTGCGCAGCTGGGAGTGATGTTTTTTGCACAAGCAGAAGAGCTTGTTGAGTGCAGGGAGCAGGAGTACAGGGATGCGTCTGGGAAGTGCATTCCCTGTAAACAGTGTGATGCGGGTCAAGAGCTGTCTAAGGAATGCGGTTTTGGCTATGGGGAGGATGCCCGGTGTTTGCCATGCAGGGTGAATCGGTTCAAAGAGGACCGAGGGCTTCAGAAGTGCAAGCCCTGCCTGGACTGCGCCCTCGTCAACCGCTTCCAGAAAGGCAACTGCAGCATGACCAGCAACGCCGTGTGTGGAGACTGCCTGCCAGGGTTTTACAGGAAGACCAAGTTGAGTGGCTTCCAAGATATGGAGTGTATACCATGCGGAGACCCACCACCTCCGTATGAACCTCACTGCAGCACACGGGTGAACCTGGTCCGCATCCCTTCAACCGTGTCCAGTCCCCGCGACACCGCGCTGGCCGCCGTCATCTGCAGCGCGCTGGCAACGGTGCTGCTGGCCCTTCTCATCCTCTGGACCACGAGATCTCAGGAGGGACCTTTCAATGGTGCCGAGCTTTCCCACTTTGACCGCCAGCGGATCGGCGAGTTCTCTCACCGAACCTGCTGCCACTGCCACCGAGATCCGGCGCAGACATGCGGTCCCGTTCACCTGATCCCGTCTCTGTGCTGTGACGAGATGTGCAGTCTGGGCCGCAGTAGTGACGGTTGCCCTTTCCACTCTCGAAACACCCTCGATGAAGGCATGGCGGATTCTGTGGACGGCCATATCCCCGCATTCCTGGCAGCGTTTCCCGATTCTTCTCCCGGAGATTCCACAGAGGTTTGGCCACTGATGCGAAACTCGGCCTGCAGTGAAAGCCTCAACTTGTCCCAGTCCGTGCTGAAGGAGAGAGGAACGCCCAGCTCGGAGAGGAGCTCGGGGACCCTGGAGGCCGCATTGGCAACCGAATCGGAAGCCCCCGCTCAGCAGGCCCTGTCTGAGACCCTGCGGTCTCTGTGTGACACGGCCAAGGAGACCAGTCGAGAAGCCAGTGAAGACATCGGTGGCACTCCCTGCAACCCTATCTCCGAATCTCCGCAGCTGCAGCCATGTCCATTTCAAGgcTGACATGCATTTGGATTTTCTGAGGCTAATTTTATATGAAGAGACATGGATAGGAGAACACAGTGGGACCCAGTTTAAGTTTGGATCGCCACACAAAACACTTCCTGAAAAGAGTTTGGCgcccatctttttttttttttaacaagctgCGTATCACCTGCGGCCTTCCTGAAAGCATCTGAAGGGACTATTATAAATACgtgcaaacaaatgcttttcacGGCAAAGCACAAGAACAATGACTCGAGCCCAGAGGAGGGATGGGGAGTTAAGGTGAGGGACTGGCCCAAGTACAGtatttaatgaagctgaaaAGAGACTGTTTGCAGTTCGTCAGGGTGCAAACCCTATTAAGTCAACAAGAGAATGCTGTTCTATATTTGATGTTCCAGAAGGAGAATGTGCCACACTTTTCCCAAGTGACTTATTAGCCAGAAAAGCAATATATTATAAGTCTGAGTTCACtatacatcaatatatataaCTGTTTACCAATCTCACACTCTGGTTCAACATTAACAGACTCAcagatctttttcttttttttcattgattttccATCTTCCTGTGGACTGCTGAATGTGCTTTTATGTGGCTATGCACTATGTTTaaggagaataaataaaaataactgggGCAGTAGTGGTTAGAGCTCTGGgctgtgggttcaatcccaggtgggggataCCTAGATTGCACCAGTATAATAAAATGGGTATCTGTGTCAAATAagaatgtgatgtattgtaacaattataagtcaccctgaataagggctGCAAAGAAATATCATAACTCTTGAGAAgaccaaaataataatcaccataATAATCCATTCACATAAATCTTATGCACTTTGAAGCAGACATGATAAAACCATAATGGAAGAGAGAGGACAGTTTGTGAATGTTTGCAGATGGGACACTCTTATTAGGTGCAACTGTGTTACTGTAGATATTGTAATATAGACAATAGaatgtgaatatttttttaatgcggGCGACTACCCAGTTCAGACCGTAGTTCATCCTGCCAGCTCAGTAGTGATGTTTTTTGACGTGTACAGTGTATACTTTTTCAAATCAACCTAAATGCCTTTTGCaacctttttgtatttgtaaataaatccTGCAAACCATGA

Function

GO: NA

KEGG:

id description
K05155 TNFRSF19, TROY; tumor necrosis factor receptor superfamily member 19

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016207 True 2653 mRNA 0.51 10 12241643 12261142

Neighbor

gene id symbol gene type direction distance location
AMCG00016206 NA coding upstream 35984 12173068 ~ 12205659 (+)
AMCG00016205 NA coding upstream 132259 12056700 ~ 12109384 (+)
AMCG00016197 pcyt1b,LOC107590340,LOC107721854 coding upstream 393779 11837672 ~ 11847864 (+)
AMCG00016196 NA coding upstream 440847 11796688 ~ 11800796 (+)
AMCG00016198 NA coding upstream 450011 11782180 ~ 11791632 (+)
AMCG00016215 NA coding downstream 124836 12385978 ~ 12397053 (+)
AMCG00016214 NA coding downstream 139687 12400829 ~ 12407292 (+)
AMCG00016218 NA coding downstream 405041 12666183 ~ 12679044 (+)
AMCG00016220 NA coding downstream 421130 12682272 ~ 12691799 (+)
AMCG00016229 NA coding downstream 624484 12885626 ~ 12890771 (+)
G11988 NA non-coding upstream 34169 12206348 ~ 12207474 (+)
G11953 NA non-coding upstream 212522 12028299 ~ 12029121 (+)
G11914 NA non-coding upstream 390022 11848285 ~ 11851621 (+)
G11905 NA non-coding upstream 422578 11817004 ~ 11819065 (+)
G11851 NA non-coding upstream 511417 11729600 ~ 11730226 (+)
G12009 NA non-coding downstream 909 12262051 ~ 12265709 (+)
G12032 NA non-coding downstream 62035 12323177 ~ 12328393 (+)
G12036 NA non-coding downstream 70994 12332136 ~ 12333112 (+)
G12042 NA non-coding downstream 93533 12354675 ~ 12355369 (+)
G12043 NA non-coding downstream 113606 12374748 ~ 12375109 (+)
AMCG00016202 NA other upstream 235691 11992972 ~ 12005952 (+)
G11921 NA other upstream 369908 11868825 ~ 11871735 (+)
AMCG00016174 NA other upstream 1283611 10844127 ~ 10958032 (+)
G11660 NA other upstream 2642487 9598815 ~ 9599156 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other upstream 2649994 9559464 ~ 9591649 (+)
AMCG00016213 NA other downstream 173994 12435136 ~ 12461265 (+)
AMCG00016221 NA other downstream 517082 12778224 ~ 12786899 (+)
AMCG00016241 NA other downstream 1010442 13271584 ~ 13389636 (+)
G12348 NA other downstream 1360737 13621879 ~ 13627711 (+)
G12349 NA other downstream 1370143 13631285 ~ 13631797 (+)

Expression


Co-expression Network