AMCG00016209


Basic Information

Item Value
gene id AMCG00016209
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12296853 ~ 12320656 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016209
CTGAAAACGGGCTGAATAGCGAGCGGGAACAACCGAGGAGGGGGTCAGAGCGGTGCAGccgaaaataaatatatatctggtAGATAATCAGCGAGTAAGACCTGACACTGCAAACACCCAGTAACAAAAGCCATGGCCGACACAACGGCCCCCAGCCCGAGTGTCTCGCTCCTTGAATCGGCCCGGGAGTTGGAGGAATATCAGCTTCTGCCCAGACGGTTGGACTGGCACGGGAATGAGCATCCTAGGACCTACGAAGATTTGgTTCGTGCGAATAAACATGTGGCACCGGATCACTTGCTGCAGATCTGCCGACAGCTCGGGCCACTTCTGGACAAAGAGGTCCCGTCGTGTGTCCCAGGCGTGTGGTCCCTGCTCGGGACAGGGAGGCACTCTCTTCTGCGCGCTGCTAAAGTGGAGGTTTTCCGGGGGAGAGAGCTGACGGGCACAGAGCGTTTTAGTTCTGCGTTTCCTGTTGGCAACTACCAGCACATGAAGATGCACAGGAGAACTCTTGGTCACCTGTCGGCCGTGTACTGTGTTGCATTTGACCGCACTGGGCTCCGCATATTCACTGGCTCTGATGACTGTTTGGTGAAGATTTGGTCCTCTTTTGATGGTAGATTACAGTCTACCCTGAGGGGCCATTCGGCAGAGATCTCTGACCTGGCCGTTAACTTCGAGAACACTCTTATAGCTGCAGGCAGCTGTGACAAGACTATCCGCGTGTGGTGCCTTCGAACCTGTGCCCCTGTGGCGGTGCTCCAGGGCCACACTGGCTCCATTACCTCCCTACAGtTCTCCCCGTTTGCCAAGGGCTCGGTGAGGTACATGGTGTCCACAGGGACAGACGGGACAGTTTGCTTCTGGCAGTGGGATGTAAATAACATGCGTTTCATCGATCGTCCGCACAAGTTTACAGAGAGACCCAGGCCGGGCGTTCAGATGATCTGCTCTTCGTTCAGTGCTGGTGGCATGTTTTTAGCAACTGGAAGTACTGACCATGTCATCAGAATGTACTACCTGGGCTCTGGCAGTCCTCAGAAGGTTGCCGAGCTTGAGGCCCACACGGACAAAGTTGACAGCATCCAATACTGCCATGCAGGAGACAGGTTTGTGAGCGGAAGCAGAGATGGCACCGCTCGGATATGGCGACTGCATCAGCAACAGTGGAGAAGCGTTTTACTTAACATGTCAACCAACCTAGCTGGGGCCGAGCCGGTGTTGAACGAGGAGACCTTTTTCAAGTCGAAGGTGACGATGGTTGCGTGGGATCGCCATGACAACACAGTCATTACAGCTGTCAATAACCATCTCCTTAAAGTGTGGAACTCCTACACCGGACAGCTGCTCCACATCTTAAAAGGCCATGAGGATGAGGTGTTTGTGTTGGAGCCACATCCCTTTGACCCCAGGATCATGCTCTCTGCAGGGCATGATGGGAACATCTTCATATGGGACATCATCCGTGGCACTAAAACACTGCACTACTTCAACATGATTGAGGGGCAGGGTCACGGGGCGGTATTTGACTGCAAGTTCTCGCCAGAAGGCCAGCGTTTTGCCTGCACAGACTCTCATGGACATCTGGTTATATTTGGGTTTGGGTCCTCGAAGCCGTATGAAAAGctcCCAGATCAGGTGTTTTTCCACACTGATTACCGCCCGCTTATCCGAGATGCGAACAATTACGTGCTGGATGAGCAGACCCAACAGGCTCCCCACCTGATGCCGCCTCCCTTCCTGGTAGATGTGGATGGAAACCCACACCCCCCCAAATACCAGAGGCTTGTCCCTGGGAGAGAGAACTTCACCGACGAGCACCTGGTGCCCCAGCTGGGATATGTTGCAACAAGCGATGGGGAAGTGGTGGAGCAGGTGATAAGCCAGCAGACCAGTGACCATGATGATGGGGCCCAGGAGCCAAGTGTTCTGGATGGCTTCATCAGGCAGCTGCTGGACCAGCAGGACCGGCAGCATGCAGCAGAGCCGGGCACCCCACGCAGAGTGTTCCGCAGTCAGAGCGTGGAGGTCCAGTCGTCCCCGAACGTGGGTCTGCGGCGCAGCGGGCAGGTGGAGGGGGTGCGGCAGATGCACCAGAACGCTCCACGGAGCCAAATGGCCACCGAGAGAGACCTGCAGGCATGGAAGCGGCGAGTCGTGGTGCCAGAGATGTCTTCCAGCGTGCATCGGAGACAAGAAGACTTCAGAATTGCAAAAGGAGATGAGGAGATTGCTCTCTTCTCTTTAAGGAAAAGGAGAGTATTGCACGCAGCTTCAAGGGATGATTCAGATGATGAAATGGTGTCCAGCAAACGAACACAGTCCCGCAGAGCCCGGGCGAGGAGCATTCGGACCCGTAACGCATTGGCTGAGGATTACATTGAGTATTCCTgcgaggagggggaggagactGAGGCCTCGGGGGCTGAGGAAAATGAAACTGAAGGCAGCGCAACACCAGCCTCTTCcaatgaggaggaggtggaggagtgGAAGAGCGACAGCTCAAGCAACTCCTCCAGCGAATACTCGGACTGGATTGCCGACGCGGGAATCAACCTACAACCGCCCACCCGCCTCTCCTCCCGACGACGCGTCAGGCGCCACATCAGCAGctccgaggaggaggaggaggaagaggaggagccaCAGGACGAAGAGGAGCACCGGCCACAGCCTCCTAAACCGAAAAAGAACAGGAATAAGATGCCAAAGCGGTCCAGTCAGAGACCATTGTTTAACAGGGAAGTTTCAAACGAGTTTCGTCCGTCCAATTGGATTACAGATGTCATTCCACGGAAGTCTCCCTTCATTCCCCAAATGGGCGATGAGGTGATCTATTTCCGCCAAGGCCATGAGGCATACGTGGAAGCGGTGAGAAGAAACAACCTTTACAGTTTAAACCCTGAGAAGCAGTCATGGAGAAAGATGGATCTCCGGGATCAAGAGTTTGTTAAAATCACTGGAATCAAGTACGAAGTGTGCCCTCCAACACTGTGCTGTCTGAAGCTCTCGCTCATTGACCACGGCACGGGGAAACTCACAGACAAGTCCTTCTCTGTTAATGAACCAGTGGTTTACAATTTGTGGAATATACCAACACTTTTCAGATATCATGACATGCCTGATGTGATAGATTTTCTGGTGCTGAGGCAGTGCTATGAGGAAGCACGGCAGAGAAACTGGCAGCCAGATGACCGCTTCCGATCGGTGATTGACGATGCGTGGTGGTTTGGGACCATAGTGTGTCAGGAGCCCTACCAGCCCGAGTATCCCGACAGTCACTTCCAGTGCATCAAAGTCCGgtGGGACAACGGTGAAACTGAAAAGCTCAGCCCCTGGGATATTGAGTCTATTCCACAAACAGCTCAGCACCCCGAGACTGTGGGAGGAAGCGTCCCTGTGACATCGGAGGAGATGAGTGAGCTGATGTACAAACCACAGGAGGGCGAGTGGGGCAGGAGGATCCGGGACGACGAGAGCGAACGCATTGTGTTGGGCATTGATCAGCTCGTGGCTCTTGACATCGCCGGCCCCTTTGTTGCTCCAGTGGACATTGTTCAGTATCCCAGTTACTGCACAGTGGTGGCATATCCTACAGACCTCAACACCATCAGAATGAGGCTGATTAACAGATTTTACAgGAGGATCTCTGCTCTAGTGTGGGAGGTGAGATACATCGAACACAATGCCAGGACCTTCAATGAACCAAAGAGCAAGATTGCACTGTCAGCCAAGAAGATCACGGACATCCTCCTGAAGTTCATCAACAAACAAGACTGTACTGATATTATGGAGGTCTATGGAATGGCCGAAGACGTGAGTTGCTCTGAAGAGGACACTGATGCACCTGGAACCTCATCAGGGAGGAGTCTGCGCCCGCACGATGCAGAACTGGTATATGATGTCGATAACTGGAAGGAGAGATGCAAGGGCCTGCTGGACTATATCCTGGAGTGCGAAGACTCGGAACCGTTCCGCCAGCCGGTGGATCCCGACATCTATCCAGATTACAGAGATATCATCGATACTCCAATGGATTTTGGGACGGTGAAGAGGACCTTGGAAGAAGACAAGTACGAGAACCCGACGGAGCTTTGCAAAGACACCCGTCTGATCTTCTTCAATGCAAAGGCCTACACGCCAAACAAGCGTTCTAAGATCTACAGCATGACTTTGCGTCTCTCTGCGTTCTTTGAGGAGCGTATCAGGATGATCATCTCAGACTACAAAACGGCCCTGAAACACAGCGCGAAGCTCCGCCGCAGCCAGAGGTGCAGGAAGAGGCTGCAGCACCGAGAGCCCTCAGTCACCAGCTGTCACACTTCCAGTCAAAAAAGGAAGTTGGTCAAAACTCAGGAAAAAACGGAAACGTCATCAAAGTCTTACACAAAATCTACCTCAGCCAAAGTGTCTGCCAGTGCGAGACGCAGAAGAAGGGGTGCCATCAGTTTCTCGGGCAGCTCCTCCAGTGAAGACTCTTCAGTGTCCTTTAAATCCCACACCAAAGCCACAGCAGTGACCTCAGGAAGCAACACTGAAGAGTCCACATCAGCCTCCGAGAGCGAGATGTCCACCAGTGTCTCTGAGGACAGTGAGGACAGCAGGGGGAGAGGAGCTGGGGCCCGGGGCAGCAGGGTGACCCGGAACCGGAAGAAGCCAGTGTtggagagcgagagcgagatgTCCACTGCTGTCTCGGAGGACAGTGAGGACAGCAGTGCCCAGGCCTCTCGTCGCCATCGGAGGAGGGAGACTGGAGTGGCGGTCAGCCAAGCCAGCAGGGTGACCAGGAATAGGGCTGCCGCGGCCAAGAGAAAGCAAGAGAGTGGAGCTCAGGTAAACGGCCACAGCAGGAGAGCCTGCCGGGGTAAGAGGAAGTGGGGCAGTGACTCTGAGAGGGAGGATCCTGCTCATCCAGACACCGNNNNNNNNNNGAGGGAGGATCCTGCTCTTCCAGACACcgagagtgagagtgaggagGAGGGTGCCCGTAGGAGGACCTCAGCCAGGAAGACTGCTGTGGCTGCGGTCAACAAGATGAAGCTGATGAGCGCCACGGAGGAGGAGCAGGACTCGCCCTCAGAAAAGGAAGAGCACCGAAAAGCCAACGGCGGTCCGCCTCTGCGCACGGCAAGCAAACGCATCCCGAATATAGAGAGCAGCTCTGAGGACGAGGAGCTGTCTTCCCGACAGCAGCTGCGTTCAGAGAAAGGAGACTcggaggacagtgaggggagcaGTGGTTCTCGCTTCTCTTCTCGGCGCCGTCTGAACGGGGAGAGTAAAAGGCCAGGGAGCCGCAGGGGCACCAGGACGAGGGCTGCGCGGGACGAGGCCGAGCAAGAGAGTGGCGGTCAGGTGAACGGCCACAGCAGCAGGACTCGCCGGGAAAAGAACAGGAAGGGGCGAAGTGACTCTGAGAAGGAATCTCCTCATCCAGACTTTGGCGAGGAGCAGAGCATCGGGAGGAGGACCTCGACCAGGAAGACCGCTGTGGCTGCGGTCAACAAGATGAAGCTGATGACCGTCACTGAAGAGCAAGAGCCAGAATCCCCGTCTGAACCTGGAGAGCACCAGCGGTCCCGGGATAGCTTTCCTCTCCGGGCAGCTAAAAAGAGCACCCTGAAGGTGCAGAGTAGCTCTGAGGAGGAGTCTGCCCAGTCTGAGGGCAGCAGCCAAGAGGACCTTCAGCGAAATGGGCGGAAGATCAAGCCGAGGAAGGGCTGTAAAGGATCTCTCTCTGACAGCGAAGAGAGTGTTCATAGCCATAAGGGGAAAGTGTATCCACGAAGTAGAGTTCCATTAAAAGGTCAGGGTCCAGAATCCGGCTCTGACGCAGGCAGTCCAAACCCCTCCCGGTCGAAAAGGTCTGCGGCTGCAGCTTCGAGATGGAATGCCATTGAATCGGAAGAGTCGACTAATGACGAGGCAGAAGAACCGTTCTCAACCGGGAGTAAGGAAACTGGGTctgaagatggcaaatgtcggGAAAGAAAAACGTCCAGAGAGGAAAGCCTGGTGTCCCGagccaaaggcaaacaaagAAGTAAACCGGGCTCTGATTCAGCTGCAGAAGAAGCTGGGGGGAAACAAAGAGCACCAAGAGAATGGGACCCTGAAATGGATGAGCCCAGGCAGCGTATGAACCGATCTATACGGGTCGGTAAAGGCAAATCCTCTCTGGCCAGAATAGAGGCCTCTCAGTCTGAGAGCGAAGAGGTGGAGGACATTTCCCCTAAAACTGGATCTGTTAGGAGAAGAAGTAAGAAAGCATTCAGCGAGTCTTCTGAAGAACAGTCAGAGAGCGCAGAGACCTCTCCACTTCAGAGCAGAAGGGAGAAGGATAATTGTGCTTCCAGGAAACACTGTGACAAACGGGGTGCTGCTAGTGTGGAGGCTGCAAGCTCTGTATACAGAAAGAAACCTTCCAGTAACTCGGAAGATACGCGGTTTGATCCTGAAGCAAATGGTCAGAGTGTCCACAGAAAATCCAGTCGTGTGTGCAGGAAAGCAATTGCAGAGAGTGATTCCCTGGAAGAAACGGTTCCCAGCAGGAAAGTGAGTCTTCGAGATCTGCCTAGAAGGAAGTATGGCACGGAAGACTCTGAGGATGAATCGTTACAGGAAGAAGAGCAATTGgagaacaggaaaaaagcacAGAAGACTGCCTCTGTACCAAAAGAGACATGTCAGTCTGATAGAGAGTTAAGAGAGCGCAAGAGGAGCCCAAGCCATAGAACCACTGCCAGGAGAAAGCGCATCCATTCAGACGACTCGGAGGACGACTCCCAAGCTCGTGATTTTGATGCTCCCtcagagagaaatggagaggtAACTGGGAAAAACGTGAGAAAAAAGGGCTTCCAGGAAGAATCGGTGAGTGAGTCGGAAGCAAAGCACAGAAACAGTCAAAGCCGTCTTCCGCTTGTCCAGACCGAGAAACGCTCTGAGGGAGACTGGTCCTCTTCGAGGGCCAGCCCGTCATGCTCATCTTTGACTTCCACAAGCCCAAGCAAAAGAAAGCGTCCAGGCAGACCACGGAGGaaggaggacagcagcagcgcagTGTCAGGCAGCGATGAAAACGATTCTTCCGCTTCAGGGTCGGAGTCTCCCGGTTCAATTTCAGACTCCAAGGGTCGCAACACTGCAAACCACTCCAAGACTGGCGCCTGTAGACAGGGCAGAGCCAGCGATCCAGGTGCTGTCCGGCGCtctgagagaaagaggaggaaacTTTCTTGCGAGGTTGAGAGCGATGATTGTGAAACTGGCTATGGAAAGCCGCATCGAGGCATTCGCATCAGGACAAGATACCGCGGCAAGCAGACTGTATCGTATCTTGACAGCGAATGATGGAATCGTTAATGGGGTTAATGTCTGCCTTTTTCTCAGTCCCTAATTTATTTGACACCTTGAAGACACTTGATTGTCATGAAAAGGTTGTAGCATCGAAATCCTTTAGCAAATGCTGTGAATATGTTTCATTCAGggataatatttatattttctatgaaaaaaaaaaagtttataaaatgtatgaactGTTAATAAGGCATTTAATTGCTGTTTTCACAAGGGTTAGCACAGATGCCATATTGTGCCTCGTTCTTGGGGCAAATCTTTAAATATGTCCAGAAGGTTAACCCAAGCAAAAACTACTTTTGTTCACTTTCTGCTTTTGTGATTTGGCCAGCTAGTCAAAAGTGTGTGGGAAGCATTAGCAGCTTGGGTGCTATCTTAATAATATACCTCTTTATGATTAATTGGATCTTGCTGGCTTACActaaaatgcatactgtataGAGGTATTCCATATGCTGGTCTTGCATTAGAAACTCAGGGGTCAAAGAAGTTTACTGTAGTCTTGTTCTTGCATTTatgttaatatgaattaataaaatgacgCAAATGTTTCCAACATGTTGCAGTTCAAACCCACAAGCACTGGCCTTGAACAAACCCACTCCACCCTCCACACATCTCTTGAAAGCCAGGAACTTTGTAAACTCTGTGATTGCTCCATAGAGatgtattaaattatgaatatgagCCAAATTGTACAAACATTGAgcccctcttttttttctttctttcttgggcATATCAGGACCTTTGAAAAGGTACCTTTGGTTCTATCACTGATTGTTTTGTCTGGAAACTAAATGGGCAGATGCCAGCTTACATGCAGAACTACAATGCCATagtaatactttattttaaaatagaatagCTTATGTTTAGGGTGAAGTGCTAAAGATcagtaaaatacttttctcaAACTAGCTACTTGTGTGGATAGACTAGAACATCAAAGTTCTGcaagctgattttttttttttttcctttactggTTTATCGTTGTGATGTAGACTTGTTGCGTTTATCATATTAGTTGGTAATTTAACTTAAAAACTTGCCAAGTGCAaacatgattttattaattttcttccCATTTTTTCCCCTTGGTTCCTGTGGCAAATACTGTTTCTCATATTGGGAAGATGTTTTTGGTGTAGTTCTTTCAGTATTAAAATTCCTGTTCAGACCTAACCTGAAACTTATACTTAAACCATAATTACTGTAACTTGGGTTTCTTGATTACATAATTTAAGAAGACTGATACAgtgttgaaaatatttttttgttttgttaatgataaaggataacactttatttttagattaatttcttttttatttggtgtTCCGTGTTTAAGTCAAATGAATTCCAGTCTACTCATCATgagttttgttcattttacatCTCATAAATGGATTTTGTGTCAACAGATGGCCATGGTGAAACGGGAGCTTGTTTTGGgctaataaaatcacatttgccAAA

Function

GO: NA

KEGG:

id description
K11798 BRWD1_3; bromodomain and WD repeat domain containing protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016209 True 8853 mRNA 0.51 41 12296853 12320656

Neighbor

gene id symbol gene type direction distance location
AMCG00016210 LOC106567911,LOC102798362,LOC104951736,LOC105923239,LOC107101883 coding downstream 793 12264274 ~ 12296060 (-)
AMCG00016208 sacs,LOC106612984 coding downstream 60331 12208148 ~ 12236522 (-)
AMCG00016204 LOC104943497 coding downstream 353201 11906076 ~ 11943652 (-)
AMCG00016200 NA coding downstream 410660 11868787 ~ 11886193 (-)
AMCG00016199 pdk3,LOC106578452 coding downstream 429984 11848284 ~ 11866869 (-)
AMCG00016212 NA coding upstream 39919 12360575 ~ 12376528 (-)
AMCG00016217 dscam,LOC106612992 coding upstream 152607 12473263 ~ 12499001 (-)
AMCG00016216 dscam,LOC105030490 coding upstream 193702 12514358 ~ 12531045 (-)
AMCG00016219 LOC106612992,LOC106581126 coding upstream 282228 12602884 ~ 12607201 (-)
AMCG00016227 NA coding upstream 407458 12728114 ~ 12734030 (-)
G11996 NA non-coding downstream 57839 12238785 ~ 12239014 (-)
G11865 NA non-coding downstream 558254 11738345 ~ 11738599 (-)
G11858 LOC106904821 non-coding downstream 579436 11701591 ~ 11717417 (-)
G11814 NA non-coding downstream 813060 11483562 ~ 11483793 (-)
G11807 NA non-coding downstream 896435 11400207 ~ 11400418 (-)
G12041 NA non-coding upstream 32504 12353160 ~ 12353381 (-)
G12046 NA non-coding upstream 34019 12354675 ~ 12355364 (-)
G12058 NA non-coding upstream 67142 12387798 ~ 12391408 (-)
G12096 NA non-coding upstream 317837 12638493 ~ 12638698 (-)
G12235 NA non-coding upstream 777335 13097991 ~ 13100224 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 349531 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 515306 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 1449042 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 3469093 8823545 ~ 8827760 (-)
G11326 NA other downstream 4102421 8191546 ~ 8194432 (-)
AMCG00016211 NA other upstream 2505 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 529222 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 1222692 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 2099700 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 2464542 14785198 ~ 14791969 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_12825387_12869026 PHIP coding CI01000001 null 12824920 ~ 12869026 (-)