AMCG00016213


Basic Information

Item Value
gene id AMCG00016213
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12435136 ~ 12461265 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016213
CGTTTGAGgcttaaataatgtttttgctgcGTGTCCGTGGCAAAGGGAAATATTGCTGCCTATTAGAGGAATAGGTCTCTGTTGGAGCTGGAAATGAAAGGTCTGGGCTATTTGCTGTCGGTTAACTCCCCTGCTTCAGAGGAAGGAAAAGACAAGGATCCGGAGCTACTGGTGGCAACAGCAAAACACCCAGTGGACAAGGCAGCTGCTAGGAGGTCTGTTAGATATGTTCAAGATGTGGAACAAGATGCATCAAAGAAGGGGACCCAAGAGGACTTTGATATCGACATGGACGCCCCGGAGACTGAGAAGGCTGCCGTTGCCATCCAGTCGCAGTTCAGGAAGTTCCAGAAGAAGAAGCATGACGATAAACCCTAGGAGTGGCTTTGTGGCTCTGCTTCCCACGGCTGGAAAGCACGGAGGTGGCATTGGCGGTGCATGTAATAGAATCACACCATATGGACTCAATGGGGAACGAAAGCAAGGCATTACCCTTTCAAATAATGACGTGTCAGTGAAACTCTATATGTAACCCATGATTTGACTGCTGTACcaataaattatgaaattatgaatGATCACTGTGggtttcgtttgtttgtttggtttacatttgttttgtttattcgcCATGCCTATTGGTATTAAAGGTAGTTTAAGCCGGGGTAAACTTTATATCTCCAACATTATTGCCTTAAGGAAATTCATCTGTATAGGCCTGGGGGTGGAAGCTAAACATTTCATCCGAGCGTCTTTGATAAGATGCAATTCTGTGGTTACCTTGATCAATTCTGTTCCATCAAACATGCAaggcaaatgtaattaatatgtcTAATGTCTCATAGTGTCTTCTGTCATTGAAGTTAAAATATACCTGTTAAAACTTCCAAATCAAGATGCTtaagttttgtatgttttcttcatAATGCCTGCCTTCTAAAGCTAGCCGACACACCGATCATTAAAGGAGTATCAGTTGGAATATGTTGAATGGTCGTTGTTCTTGGTGTCTGAGGTTCTTTTGTGCTCCCACATGAGAATAAATGATtgaattttgattatttttaaaataaaccatgacGAAGAGCAATATTTTACAGTGTGCTTGGGTGACAAGACTACAGTTTCTGTGCATTTATCATGCAGTTCCATATCAATCGTATTTCCAAAACGTTTTTGTGATCCCATGACCTTAACGGTACTGTGGAAGATTAATATTATTGGAGTGATTTATTAGAAGTGCTGCTCTGGGAGTTTAAACTCCCTTTGTAAAATCACATTGCCATAGAAATTTaagaatgaaatatttatttatttttacaataatagCAATTATATGCAATAGTATCCAAagaacaaattatatacatccagctaattaacaattattttaaggtaatatatattttccacacCAAAGTGGGGCTGATTTGACAAAATATaaagtactttacctagattcgATGTGTTCAGCAGAATGTATCGCTCCATTATGAAATACCTATAAATGCTGGATTAGTATTCTCTCTGAAACATACTGTAATTATGTTTTCCCAAGTTAATGCCtcttattttggttttatggGCTCTTAGGCTTTATGTGTGAAATAATTGGGTGTTCGACGTTTTGTTGATTCACATCTTTCCCCCCCCCTCATCTTTTCCAATAAATTGCTTACATCGGACATTTTGTCTGCAGTGGCCGTGTCATTGGTCATCACTGGTAAATCAAtgatggttgtgtgtttttatatgcaCAAATTGAGCCTCTTCTACTTTCTTGCCAATGTAAATACTTTCTGTTGTGAATGATCTGAGGCCAAGGTCTATTTTTATAACACTTGTAATAACATCTATGCGAGACACCATCTACACTGCTTAGTGATCAtttgctttcttatttttttatatttaaccaAGAATttctgtacaataaataaaatgaccatCATATTTAGACAA
>TU14906
GTTTAGTGGAGCCGTGATGCCATCGAGGAGCTGCTCTTCTTACTTTAAAAAGCTCTCCCGGCAGCGGCCAGGCACTGGGAACCAGACGACCATTCATTCCTATAGGCGATAAGGAGCATCAGCGATTACACTGGTGAACCATGAGTGGGAGACAAGGATCCGGAGCTACTGGTGGCAACAGCAAAACACCCAGTGGACAAGATGCATCAAAGAAGGGGACCCAAGAGGACTTTGATATCGACATGGACGCCCCGGAGACTGAGAAGGCTGCCGTTGCCATCCAGTCGCAGTTCAGGAAGTTCCAGAAGAAGAAGCATGACGATAAACCCTAGGAGTGGCTTTGTGGCTCTGCTTCCCACGGCTGGAAAGCACGGAGGTGGCATTGGCGGTGCATGTAATAGAATCACACCATATGGACTCAATGGGGAACGAAAGCAAGGCATTACCCTTTCAAATAATGACGTGTCAGTGAAACTCTATATGTAACCCATGATTTGACTGCTGTACcaataaattatgaaattatgaatGATCACTGTGggtttcgtttgtttgtttggtttacatttgttttgtttattcgcCATGCCTATTGGTATTAAAGGTAGTTTAAGCCGGGGTAAACTTTATATCTCCAACATTATTGCCTTAAGGAAATTCATCTGTATAGGCCTGGGGGTGGAAGCTAAACATTTCATCCGAGCGTCTTTGATAAGATGCAATTCTGTGGTTACCTTGATCAATTCTGTTCCATCAAACATGCAaggcaaatgtaattaatatgtcTAATGTCTCATAGTGTCTTCTGTCATTGAAGTTAAAATATACCTGTTAAAACTTCCAAATCAAGATGCTtaagttttgtatgttttcttcatAATGCCTGCCTTCTAAAGCTAGCCGACACACCGATCATTAAAGGAGTATCAGTTGG

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0031267 small GTPase binding molecular_function

KEGG:

id description
ko04911 Insulin secretion

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016213 True 1962 mRNA 0.38 4 12441932 12461265
TU14906 False 934 lncRNA 0.44 3 12435136 12460283

Neighbor

gene id symbol gene type direction distance location
AMCG00016214 NA coding upstream 27844 12400829 ~ 12407292 (+)
AMCG00016215 NA coding upstream 38083 12385978 ~ 12397053 (+)
AMCG00016207 NA coding upstream 173994 12241643 ~ 12261142 (+)
AMCG00016206 NA coding upstream 229477 12173068 ~ 12205659 (+)
AMCG00016205 NA coding upstream 325752 12056700 ~ 12109384 (+)
AMCG00016218 NA coding downstream 204918 12666183 ~ 12679044 (+)
AMCG00016220 NA coding downstream 221007 12682272 ~ 12691799 (+)
AMCG00016229 NA coding downstream 424361 12885626 ~ 12890771 (+)
AMCG00016230 NA coding downstream 498783 12960048 ~ 12973547 (+)
AMCG00016237 NA coding downstream 559718 13020983 ~ 13021201 (+)
G12043 NA non-coding upstream 60027 12374748 ~ 12375109 (+)
G12042 NA non-coding upstream 79767 12354675 ~ 12355369 (+)
G12036 NA non-coding upstream 102024 12332136 ~ 12333112 (+)
G12032 NA non-coding upstream 106743 12323177 ~ 12328393 (+)
G12009 NA non-coding upstream 169427 12262051 ~ 12265709 (+)
G12183 NA non-coding downstream 442087 12903352 ~ 12903574 (+)
G12209 serpinh1b,LOC106613072,LOC107666206,LOC107588392,LOC107756564,LOC106581278 non-coding downstream 517013 12978278 ~ 12979516 (+)
G12214 NA non-coding downstream 580977 13042242 ~ 13100583 (+)
G12217 NA non-coding downstream 603954 13065219 ~ 13065938 (+)
G12220 NA non-coding downstream 610306 13071571 ~ 13073752 (+)
AMCG00016202 NA other upstream 429184 11992972 ~ 12005952 (+)
G11921 NA other upstream 563401 11868825 ~ 11871735 (+)
AMCG00016174 NA other upstream 1477104 10844127 ~ 10958032 (+)
G11660 NA other upstream 2835980 9598815 ~ 9599156 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other upstream 2843487 9559464 ~ 9591649 (+)
AMCG00016221 NA other downstream 316959 12778224 ~ 12786899 (+)
AMCG00016241 NA other downstream 810319 13271584 ~ 13389636 (+)
G12348 NA other downstream 1160614 13621879 ~ 13627711 (+)
G12349 NA other downstream 1170020 13631285 ~ 13631797 (+)
G12351 NA other downstream 1174177 13635442 ~ 13637001 (+)

Expression


Co-expression Network