AMCG00016220


Basic Information

Item Value
gene id AMCG00016220
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12682272 ~ 12691799 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016220
TTCAGAGATGCGTTTCAAAGTGaattcattactttttaattaccttcacatacacatataatgGAAACAAAACTGTTGAACGTCAACAAGGCGTCAGACTGAGCAGCTGCTGAGAGAAAGTTGCCCAGACGCGTGAAGCCGCTGCTCGGTGCGGCTGGCTGGGCTGGACACTCAAGTGAGCCGTGAGCCGCTGTGCTGTCCCATCATGGGCTCTGCAACTGGGCAATGTAGCGGGAAGTAGCAGCCATGAAAACTGTGCACTCGGTATTTGTTCGTAATTAAAGCGGAATTCATGACTTTACACGACTGTCGTGTCGGTCCTCTACGTCATCGGCTGGCTCTGGTCTCTGAAGCGCACTCTCACCGAAGTCATCTGGAAGCATGTTCCTTTGCCCCGTAAGACTTTCAGGAATTTTCCTGCGGGGTCTTGTTCTGCTGGTATCTTGCGTAGTAGCTTGGTATGTGGGACATGTACTTGCTGTTCTCATACCTCCTGATGTCCTCTCCTTGGCTGTGAGTAGCATTCATAAAGTAGCACTGAACTCTCTCATGGCAGCCCCGGCTCCCCAAAGACAGAGGTGTAATCTGTGCCCAGCAGGAACTTTTGATTTCCAGCTAATGAGTGGGGGGGGAGTCAAAGTATCCCCAAGAATCTGCTTTAAGGATGAAATCATAATGGGAGAAGGAAAAGACTGCACAGGAAGAGGAATTAATATTGCAGCTTTTGATGCCTCATCAGGGAAAGTGTTTGGTTGCAAGAGCTTTGACATGTGGGAAGGAGACAACTCTGGCATCATGGTGAAATTCCTCCGAGAGATTCCCAATGTTTCGATCATACTGATGGCAAGTTATGATGACGCAAGTACCAAACTATCAGAAGAAGTAAAGGAGGAGATTAAGAAACTGGGAAGTGTGGAAATTCAAAACATTGACTTCCGCTCAAGCTGGGTCTTTGTGGGATCAAAAGGATTCAGCTTGCCGACtgacctgcagagagagaagaTTAATCATTCTGACAAATCAATGGACAAATATGTCGGCTGGCCTGCAGAAGTGCAAATCAAAGGTTGCATCCCACATCACTAATCTGAGACTGTATAGTTCCCTGTGCaaatctttttaatattatgaacCTCCCTGAGAATCCCATTGACGTCACCGAATTACCACCTCCCTTTTACTGTTgataatactgttttaataaaacattattcaaaaaataaaaagtctattgcacttatttaaacaattgtttTCTCCCCAATAATAGCACTGGTCCATTCAGAAACAGTGGAAAGAGGAGGTTacctttgtttcttttaatttgttttcatttaaaataatgtcattcaaaattgtatttctaaaatataatgGCCTGTAttacactttgttttgattgtaccttgtttgtatttctattgTAATGTTCGCTGGGTTTACTAAGGAATGAGACCAACTCATCACAGCAGTTAGAACTTGGACAGCTTTATTCACGATTAGACACACAGTTACAGactgaagacagagagagagagagagcactccCGCTTCCTCCTGACCTTTATGTCCTCCATGTGCTCCCTCTCACTGTCCTGCCTTTCCACACCCAGGTCCCCTTAATTAACCCTTTGCTCGCCAACCTTAGGTGTAGTGgcacatttttcactttctCATGTTAACCCAAAGCAAATGATTTTCACACTCTcataaaatataagtaaaatagaAATATAGATATCCGACTGGAAGCAATCTGTTCAAACACAAAAGTCACGTTTGTCCCATCAACATatcagtatttttttgtatttgtgtttgttactAAAGTTG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016220 True 1833 mRNA 0.42 8 12682272 12691799

Neighbor

gene id symbol gene type direction distance location
AMCG00016218 NA coding upstream 3228 12666183 ~ 12679044 (+)
AMCG00016214 NA coding upstream 274980 12400829 ~ 12407292 (+)
AMCG00016215 NA coding upstream 285219 12385978 ~ 12397053 (+)
AMCG00016207 NA coding upstream 421130 12241643 ~ 12261142 (+)
AMCG00016206 NA coding upstream 476613 12173068 ~ 12205659 (+)
AMCG00016229 NA coding downstream 193827 12885626 ~ 12890771 (+)
AMCG00016230 NA coding downstream 268249 12960048 ~ 12973547 (+)
AMCG00016237 NA coding downstream 329184 13020983 ~ 13021201 (+)
AMCG00016231 NA coding downstream 345383 13037182 ~ 13063508 (+)
AMCG00016240 NA coding downstream 493235 13185034 ~ 13188393 (+)
G12043 NA non-coding upstream 307163 12374748 ~ 12375109 (+)
G12042 NA non-coding upstream 326903 12354675 ~ 12355369 (+)
G12036 NA non-coding upstream 349160 12332136 ~ 12333112 (+)
G12032 NA non-coding upstream 353879 12323177 ~ 12328393 (+)
G12009 NA non-coding upstream 416563 12262051 ~ 12265709 (+)
G12183 NA non-coding downstream 211553 12903352 ~ 12903574 (+)
G12209 serpinh1b,LOC106613072,LOC107666206,LOC107588392,LOC107756564,LOC106581278 non-coding downstream 286479 12978278 ~ 12979516 (+)
G12214 NA non-coding downstream 350443 13042242 ~ 13100583 (+)
G12217 NA non-coding downstream 373420 13065219 ~ 13065938 (+)
G12220 NA non-coding downstream 379772 13071571 ~ 13073752 (+)
AMCG00016213 NA other upstream 221007 12435136 ~ 12461265 (+)
AMCG00016202 NA other upstream 676320 11992972 ~ 12005952 (+)
G11921 NA other upstream 810537 11868825 ~ 11871735 (+)
AMCG00016174 NA other upstream 1724240 10844127 ~ 10958032 (+)
G11660 NA other upstream 3083116 9598815 ~ 9599156 (+)
AMCG00016221 NA other downstream 86425 12778224 ~ 12786899 (+)
AMCG00016241 NA other downstream 579785 13271584 ~ 13389636 (+)
G12348 NA other downstream 930080 13621879 ~ 13627711 (+)
G12349 NA other downstream 939486 13631285 ~ 13631797 (+)
G12351 NA other downstream 943643 13635442 ~ 13637001 (+)

Expression


Co-expression Network