AMCG00016229


Basic Information

Item Value
gene id AMCG00016229
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12885626 ~ 12890771 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016229
CTCGTGTATCAGGGCAGCAGAATCCAGAGGCAACATGCAGGTCAGCGCGCTCCTGTTTCTCCTGATAATCGCAGGCTCCTTTACATTTCCGCTGCCTTCACAGGAGTCAGAGAAGGATGAGCACAGCAAGCACGCCGCAGAGACTTACCTCCGCAGGTTCTACGGTCTCCCTCCTCCTGCGCTCCATGGCCTGGGTCGGCCCTCGGACCTCATGCAGGAGAAGATCAGAGAGATGCAAGCCTTCTTCCACCTGAAGGTCACTGGGAATCTAGATGCAGACACACTGGAGGTCATGAAAATGGCTCGCTGTGGGGTTCCCGACGTTAGGGAGTACAATCTCTTCCCCAGGAACCTCAAATGGGACAACACCAATGTGACATTCAGGATTGTAAATTACACCCCAGATCTGAAGCCTCAAGACGTTGATAGGGCCATCCACAATGCGCTCAAAGTATGGAGTGACGTGACGCCTTTGGTTTTCAAGAAGATACATGAAGGCACTGCAGACATCATGATAGCCTTCGGAGCAAAGGAACACGGGGACTTCAATCCTTTTGATGGACCCAACGGCCTGCTAGCACATGCATACCCTCCTGGCAAGAACCTCGGCGGAGACACACACTTTGATGAAGATGAAACGTGGTCAACAGACTCAAGTGGTTACAACTTGTTCATAGTTGCCACCCATGAGTTTGGTCatgctctgggcctggcccacTCGAACGACCCCGGTGCTCTGATGTATCCAGTGTACTCCTACTCCGAGGGCTTTCCTCTCTCTGAGGATGATATGAATGGAATACAGGCCCTCTATGGCCCAAACCCGAATTACCGAAAAGTGAAACCCAAGCCTGATGCACCTGATAAATGTGATCCCATGCTGACTTTCGATGCTGTGACTGAACTCAGAGGGGAAACCATCATCTTTAAAGACAGGTTTTTCTGGCGTCTGCATCCTCAGATGATTGAACCAGAACAAACCCTTATTAAAATGACCTGGCCCTCTCTTCCAAACAAAATTGACGCAGCATACGAATCCCCTGAAAAGGACCTGGTCTTCATATtcagagGTATCAAAATGTGGGCTCTGAATGGATACACTTTGGTTGAAGGCTACCCAAAATATATTCACAAGTTGGGTCTTCCAAAGAGCGTGCGGAGAATAGATGCTGCCGTCTACCTCAAAGAGACCAGGAAGACGCTGCTTTTCACAGATGAGGATTATTGGAGCTATGATGAGAGCAGTGGAACAATGGACAAGGGCTTCCCCAGGTCCATAGAGGACGATTTCCCAGGCATTGGGGAGGAAGTAGATGCTGTTTCCAATCAACATGGCTATCTGTACTTCTACCGTGAACATGTGCAGTTCGAGTACAATTACAGAGCCCGCAGGGTCCTGCGCATCCAGAGGACAAACGCCATCCTCAACTGCTAAAGCACCCAGGGGATGAAAAGATGGCACCATATGCATAATTCAGTGTGAACACAATTTGTATAAAACATGTGCTGAGGCCTTCACGCCTCAGCTGGAATCCTGTGTGTTGACCACGCAGCTCATTGTAAACGCTGGTCTGTTGCCAAAGGTTTTTAACTTATTAAATTATAGAACAATCTGTTTTCATTCAACTGTATTGTTTCATTGGAAGGGTGAGGGTGGATTAAGggatatgtgtttgtgtgaatctAACAATTTTGTTTCCGTGTTCAGATTAAAGATAATTTATAAACCAAAATTGGTGAGAAATAAGCATCTTTCTCTGTGTTGACGAAGAATAAATTGAtcaatgcagtgttttaataaaaGGACAGGATTGTTAACAACTTA

Function

GO: NA

KEGG:

id description
K07994 MMP13; matrix metalloproteinase-13 (collagenase 3)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016229 True 1825 mRNA 0.47 10 12885626 12890771

Neighbor

gene id symbol gene type direction distance location
AMCG00016220 NA coding upstream 193827 12682272 ~ 12691799 (+)
AMCG00016218 NA coding upstream 206582 12666183 ~ 12679044 (+)
AMCG00016214 NA coding upstream 478334 12400829 ~ 12407292 (+)
AMCG00016215 NA coding upstream 488573 12385978 ~ 12397053 (+)
AMCG00016207 NA coding upstream 624484 12241643 ~ 12261142 (+)
AMCG00016230 NA coding downstream 69277 12960048 ~ 12973547 (+)
AMCG00016237 NA coding downstream 130212 13020983 ~ 13021201 (+)
AMCG00016231 NA coding downstream 146411 13037182 ~ 13063508 (+)
AMCG00016240 NA coding downstream 294263 13185034 ~ 13188393 (+)
AMCG00016239 usp25,LOC107653727 coding downstream 321287 13212058 ~ 13247016 (+)
G12043 NA non-coding upstream 510517 12374748 ~ 12375109 (+)
G12042 NA non-coding upstream 530257 12354675 ~ 12355369 (+)
G12036 NA non-coding upstream 552514 12332136 ~ 12333112 (+)
G12032 NA non-coding upstream 557233 12323177 ~ 12328393 (+)
G12009 NA non-coding upstream 619917 12262051 ~ 12265709 (+)
G12183 NA non-coding downstream 12581 12903352 ~ 12903574 (+)
G12209 serpinh1b,LOC106613072,LOC107666206,LOC107588392,LOC107756564,LOC106581278 non-coding downstream 87507 12978278 ~ 12979516 (+)
G12214 NA non-coding downstream 151471 13042242 ~ 13100583 (+)
G12217 NA non-coding downstream 174448 13065219 ~ 13065938 (+)
G12220 NA non-coding downstream 180800 13071571 ~ 13073752 (+)
AMCG00016221 NA other upstream 98727 12778224 ~ 12786899 (+)
AMCG00016213 NA other upstream 424361 12435136 ~ 12461265 (+)
AMCG00016202 NA other upstream 879674 11992972 ~ 12005952 (+)
G11921 NA other upstream 1013891 11868825 ~ 11871735 (+)
AMCG00016174 NA other upstream 1927594 10844127 ~ 10958032 (+)
AMCG00016241 NA other downstream 380813 13271584 ~ 13389636 (+)
G12348 NA other downstream 731108 13621879 ~ 13627711 (+)
G12349 NA other downstream 740514 13631285 ~ 13631797 (+)
G12351 NA other downstream 744671 13635442 ~ 13637001 (+)
G12587 NA other downstream 1547000 14437771 ~ 14438606 (+)

Expression


Co-expression Network