AMCG00016238


Basic Information

Item Value
gene id AMCG00016238
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13065216 ~ 13071642 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016238
CGATCGAGCAGTTTTGGAAGATTTGATGCTTTCAGACACCATTCAACTTCGCCGAAGCCAGATGAACATGCAGAGACAAACCCGGCAGAAGGGGAGGCAGGAGCAGAGAGCTGCGACCACAACCATGCCAAAACTGGCAGTCTGGGAAAGAAGATGAGGGCCATTTCACTAACCATGCGCAAaaagatggggaaaaaatacatcaaagccCTTTCAGAGGAAATGATTGAAGATGCAGATAGAGACCATGAAGGTGAAACTCAGGGGGGCCGACCTTTAGAAAAAAGTGTCTTGAAAAACAGTGAATCTACAGAAAGCCTCTACAGTCTCAACAGTGGCCAGAGCTCCTCCAGTGGGATCACCAGCGGGTCAGATGGTTCCAGTAACAGAGACAGCCTGAGACTGGAGGAAGAGATCCCATACACTGGACCTTTCTGTGGCAGAGCCAGGGTTCACACAGACTTTATCCCGAGCCCCTATGACACAGACTCACTCAAACTAAAGATTGGAGATGTGATTGACATAATCAGCAAACCACCCATGGGAATATGGACTGGCATGCTTAACAGCAAAATTGGAAACTTCAAATTCATCTATGTTGACATTCTGATGGAGAAGGAGGTGGAGACCCGCAAGATCAGACCTCGCAGGAGAAGCAAGCGCCCCCGACCCAAAaccctgcaggagctgttggagcGCATTCATTTAGAGGAATACACCTCCTCGCTGCTCCTCAATGGCTATCAGAATGTGGAAGACCTCAAAGATTTAAAGGAAAATCACCTGATTGAACTGAATGTAACCGACCCAGAGCACAGGGCCCGGCTGCTGGCCGCAACAGAGTTCCTGCTGGACTTGGAAAATGAAAATGACCCGGAGAGTGGGATTCTCCAGGAACCTCGGTCCCCATCCGATAACCTGAAGGTGGATCAGGAACCCCTTAACGAATGTCCCAGAGACTCAGGGTGTTACATAACAACAGAGTGCCCAGACACCAGCAAAGACGACACGGAAGATGAAAGCCAGACAGACCTTGCAATTAACGTCCCTGCCCAGACCTAACTACTGCACTTTATTTCCATCACTTTATATAGTTGTACTGAGTTAAGACTGTAAATATTCTTGGATCaactataatacaaatatgtgctTCCCCCCCTTTTCATCTAAAAGCGCTGCATCTACACTATCTTTACTTGTCTAagtgatcattttatttatttccattctgtATGCTGTAGGTGGCCACCCTTCTCCTTGCTTGCGAAGCTCTGATGCAAGGTAGATGCAAGGTACACGGTAGTGGGGCCAGAAAACTAGCAGCGTCGAGAACTCTTTTGGTATCTGCTGCTATCAGTTTTAACACAAGACAGTTGTAAAAAAAAGTCTTGACATTCCCAAAgttatattgtaaatatgtgAGTGTAATAGAAATTGTATGATGTAAAAGATAGAGAAGTCCTTTGTGAATTGAAATGATTATTTATGTTGATGTACCTACAATATATCCTTATTTACACTATTCTATTTTTACCATTCCGTGGATTAttgttgaaatgaaataaaggttttctttttttaaagatacaa

Function

GO: NA

KEGG:

id description
K23707 SAMSN1; SAM domain-containing protein SAMSN-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016238 True 1590 mRNA 0.44 7 13065216 13071642

Neighbor

gene id symbol gene type direction distance location
AMCG00016234 stch,hspa13,LOC106613070 coding downstream 2451 13060741 ~ 13062765 (-)
AMCG00016233 serpinh1b,LOC107588392,LOC107666206,LOC107756564,LOC107743426 coding downstream 81920 12978276 ~ 12983296 (-)
AMCG00016235 NA coding downstream 115636 12940122 ~ 12949580 (-)
AMCG00016232 NA coding downstream 132919 12906907 ~ 12932297 (-)
AMCG00016236 NA coding downstream 166906 12890978 ~ 12898310 (-)
AMCG00016243 NA coding upstream 395716 13467358 ~ 13477045 (-)
AMCG00016248 NA coding upstream 412695 13484337 ~ 13494574 (-)
AMCG00016244 NA coding upstream 450532 13522174 ~ 13534975 (-)
AMCG00016247 zgc:112083,LOC108278169,LOC107726099,LOC107662779 coding upstream 464052 13535694 ~ 13542635 (-)
AMCG00016245 NA coding upstream 490529 13562171 ~ 13582666 (-)
G12096 NA non-coding downstream 426518 12638493 ~ 12638698 (-)
G12058 NA non-coding downstream 673808 12387798 ~ 12391408 (-)
G12046 NA non-coding downstream 709852 12354675 ~ 12355364 (-)
G12041 NA non-coding downstream 711835 12353160 ~ 12353381 (-)
G11996 NA non-coding downstream 826202 12238785 ~ 12239014 (-)
G12235 NA non-coding upstream 26349 13097991 ~ 13100224 (-)
G12359 NA non-coding upstream 555613 13627255 ~ 13639150 (-)
G12358 NA non-coding upstream 566661 13638303 ~ 13639590 (-)
G12373 NA non-coding upstream 585801 13657443 ~ 13659659 (-)
G12585 NA non-coding upstream 1355983 14427625 ~ 14428817 (-)
AMCG00016226 NA other downstream 194656 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 736183 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 1117894 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 1283669 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 2217405 10834412 ~ 10847811 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 471706 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 1348714 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 1713556 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 3398969 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 3786899 16858541 ~ 16861179 (-)

Expression


Co-expression Network