AMCG00016240


Basic Information

Item Value
gene id AMCG00016240
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13185034 ~ 13188393 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016240
ATGCACCAGGATTCTGCGGTTTTAACTTATCTGGAAGGTTTACTAATGCATCAGGTGGCGGGCGGACAAGGTGCCACGGCTACAAGGAGATCTGAAGCTGGGCACGGCGACCGGGAGCAGAGCAACAAGCCGGTCGCCAGCTATCAGTTGCCGAACCATGGTCCTAATCAGGAAGACCGGAGCGTTCCTCTTGGGGGATCCACACAGCACCTTAAAAAAGCCCGGCTGCTCCGCTCCTCTGAGGCCTGGACTGAGCCCGAGAGCCGGCGAATGTCCGCCCCCGTAGGGGATTTAAATGGGCAGAGCAGGGAGCTGCTCACAGGAGCTCTGGATGGATCCCCTAAATGCAAAGGAGAAAGCACTCTGCTGGCATCCCTGCTGCAGTCTTTCAGCTCCCGGCTGCAGAGCGTGGCGCTCTCACAGCAGATCATGCAGAACCTGAAGCAGCAAGACTACCCCCAAAGCGACGAGAGCACTCCAGAGGAAGACGAGGCCCTGAGATGTTTTGGAAGTGCGTCCAGTCGCTTAAAGGGCCTGTTGAAGAAGAATAAAATGCAGAACCACAACAGTGTGCCTTACCGCCGGAGAAGCAGCCAGGAGAGGTCCTCCGATTCCCCCCAGGCGTCACAGGGCAGCGCTCAGCCTGCCTCTGGGGATGCTCTGTCCTGCGCCGCCAGACTCAAAGCTGTAGCCAGCATGGTGAAGCACAGATCCAGCCCTGCTTCTTCCCCAAAACCCAGTGTTGCCTGTAGTCAGCTGGCCTTACTGCTCTCCAGTGAAGCTCATCTGCAGCAGTATTCCCGGGAGCAGGCCTTGAAAGCACAATTATCTGGGCGATCTGCCAGTGAGAGACTTGCAGCAATGGCCACACAGCAAACACTGGATAATAAGCAGGCCAACGTGGGCCAGCATCAGCTGTCCTCAGATATGGGAAGCCCTTTAAATGAACAGAATGGCACACTCCCTCGGACCACTGTCGACTCCAGTAAATGCAGTCCTGGGCCCATTCTGGGACCGAGCAGATCCACTAGTTCCCCCCGCGCTCTTCATCCTTTCAGGGAAAAACGCTCCTTCGAGAAACCAAACCCAAGACCCTCCCCAAACTGCAGCAGCTTGCTTTTGCACCTTTTGAATAACCACAACACGCAGCGGCAGACCAACGGGCACAGCCACCAGGAGGAAGATTACAGCGTCTTCCCAAACCACAGCTCACCGCTGCCATCCGACAGCGAATACTCCAACCACGAGAACAGCTTCACAAAAGACATTAGTGATGCAGagagctccagctccagctgctCCCCCATAGACCTTTCCGTGAAGAGCAGGGCCAGCGGTCCCATGTTGGGTTCCTCATCATCTCTGGACAAACTTACGGAGTCTCTGATTAGTAACTGGAACCCTGAGACACCCCTGCATAAAATCACAGAGAACAGAGAACTGAAAAACAGTTCGGTTATCAAACCCCATCACAAAGTCACCCTTCTGCAATTGCTGTTGGATCACAAAAACAACGAGAAGGTCAATAAAAGTGCAGGCAGTCCCGATGCACAGAGAGACGTGAGCCCTAAACCCAGTGCGGCTACTGGCCGGAACACGCCTATCAGTAGCTTGGAAGACAGAAGTACGAGAAACTCTCCCGATGTGATGTGTTTCCGGAAATTGCAGCCCTTGCCTACAATCTCACAGGGGCGAGACTCGAACGGCAGTGCATCGCCGTACAGCTTGAACCTGTCGCCTCAGGTGCAGGCGACTCCCTTAGACCTGTGTAAGACTAAATCCCACTCCGGTGAAAGTGCCCAAGAGTCCTCCTTTAGTGCCagtaaattattacaaaatttAGCACAATGTGGATTACAAAAATCAGTCCCATCACCTCCTGCAGAGACTCTCGCGCCTCCTGGTAAAAGGCAGGCATACGAATTAAAAACTGATAAACCTGTGGCATTGCTCGAAAGACTCAATGCCCCTCTACCAAGGAAAACACACCCTGTTCTCGAAGAGCCCCATGTGAGCGGGGTCAAGTCTCCATTTGTGGTGGAACCTACATCCCCCTCCGTATCGGAGATCGAGAACCTGCTCGAGAAACGCACCGTCCTTCAGCTGCTATTGggaaccaccaccaccaccaaggAAAAAGCAGGGAATAAGCGGAAGAGACCAGCAGCCAAAGGAAATGCTCTGGAAAAACAGTCCAACCAATCCTTGAGCCACGGGAGCTCAAACGATACAATGCTGGATGTCCAGATAAAGACTGAGCCGACGCAGGAGGTCCATGTGTCTGAGCATGATGGAAATGCTGAAGGAGGCCAAAGAGAGGAACAGAGGGAGGGAAACGGCCCTCTTCCTGTAGCCtacaaacacattaaatcaGAGCCCTTCTCTTCAGAAGCCATTCCTAAAGATGGCCTGCTGAGCCAGCTGTTAAAACACCAGCCCGGTACATATCAAATGCATAAAAGCCCAGATGTAAATATGAGCAATGTGAAAGAAGGGTCATCTCTGCATCAAGGACCAGCAATCCCCAAAAAGAGGAAGATCTGTAAGGAACTGACTGAACGCTTGAGCTGTGATGTCCGACCAGGCAGCAGTGCAGCCCACAGGGAGGCAAGTGCTGAGCGCTGTGCCTCTGGCCCGTCTGAAGGACGCAGTTTCAGCAGTCCGGTGAACCGGCTGGAGGCCGACGCCCTCGGGCCTGTGGGATATTCTGTGAGCAGTTCTCCCCCAAAAGACAATAAAGGCTTCAATGTGCTGAAGCAGCTCCTACTTTCGGACAACTGTTTAAAAGATCTGTCGCAGCCACGAATAGGCGCCAACCCCGCTGTTCTTCAGGCTAAGATCAATGGGAACAGCCCCAATCTGCCCAGTTACAATCATGAACTCGCCACCTTGCAGCGCAACTCCAGTCCACAGGGGCTGGGGCCTCTCGACCTCAAGGGCTTCAACGCTGCCCAGGAGCGGAGCAACCCTCCCATTTCTCCGTGGGGTTACAGCACCGCTAGACAGGACTCTCCGAAACTCAACCTCGTCCCTGTCAAGCGAGAAGTGGAGGGCCCCATTCAGTGGGTTATCAGTGGGGAAGACAAGCATGACTTAAACCGCGATTCTCCCAGGCTGACCAAGTCCAACCCCATATTGTACTATATGCTGCAGAAAGGGAACTCCCATATCAACCGAGAGGGCAAAGAGAAAAGGGTCGAGCCGCTGCAGTGTGGGATGCAAGTGAAAATTAAAGAGGAGCCCGTGTCTGACTTGGATGCTTACACCCACAGACTGAACTTGAAACATCACTTGCAGCTCCACGAGGAGAAGCGAGGGAGTGACACTGATGGGCTCAATGGGACAGTAGAAAAGTGCTAA

Function

GO: NA

KEGG:

id description
K17965 NRIP1; nuclear receptor-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016240 True 3360 mRNA 0.54 1 13185034 13188393

Neighbor

gene id symbol gene type direction distance location
AMCG00016231 NA coding upstream 121526 13037182 ~ 13063508 (+)
AMCG00016237 NA coding upstream 163833 13020983 ~ 13021201 (+)
AMCG00016230 NA coding upstream 211487 12960048 ~ 12973547 (+)
AMCG00016229 NA coding upstream 294263 12885626 ~ 12890771 (+)
AMCG00016220 NA coding upstream 493235 12682272 ~ 12691799 (+)
AMCG00016239 usp25,LOC107653727 coding downstream 23665 13212058 ~ 13247016 (+)
AMCG00016242 NA coding downstream 256645 13445038 ~ 13455916 (+)
AMCG00016249 atg101,LOC107751375,LOC107686213,LOC107589731 coding downstream 394651 13583044 ~ 13588973 (+)
AMCG00016250 NA coding downstream 409441 13597834 ~ 13617644 (+)
AMCG00016256 NA coding downstream 488601 13676994 ~ 13705883 (+)
G12214 NA non-coding upstream 84451 13042242 ~ 13100583 (+)
G12220 NA non-coding upstream 111282 13071571 ~ 13073752 (+)
G12217 NA non-coding upstream 119096 13065219 ~ 13065938 (+)
G12209 serpinh1b,LOC106613072,LOC107666206,LOC107588392,LOC107756564,LOC106581278 non-coding upstream 205518 12978278 ~ 12979516 (+)
G12183 NA non-coding upstream 281460 12903352 ~ 12903574 (+)
G12289 NA non-coding downstream 285095 13473488 ~ 13473785 (+)
G12330 NA non-coding downstream 358006 13546399 ~ 13546598 (+)
G12331 NA non-coding downstream 363201 13551594 ~ 13551858 (+)
G12347 NA non-coding downstream 449909 13638302 ~ 13639588 (+)
G12368 NA non-coding downstream 469000 13657393 ~ 13659659 (+)
AMCG00016221 NA other upstream 398135 12778224 ~ 12786899 (+)
AMCG00016213 NA other upstream 723769 12435136 ~ 12461265 (+)
AMCG00016202 NA other upstream 1179082 11992972 ~ 12005952 (+)
G11921 NA other upstream 1313299 11868825 ~ 11871735 (+)
AMCG00016174 NA other upstream 2227002 10844127 ~ 10958032 (+)
AMCG00016241 NA other downstream 83191 13271584 ~ 13389636 (+)
G12348 NA other downstream 433486 13621879 ~ 13627711 (+)
G12349 NA other downstream 442892 13631285 ~ 13631797 (+)
G12351 NA other downstream 447049 13635442 ~ 13637001 (+)
G12587 NA other downstream 1249378 14437771 ~ 14438606 (+)

Expression


Co-expression Network