AMCG00016241


Basic Information

Item Value
gene id AMCG00016241
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13271584 ~ 13389636 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016241
ATGTCCATGAAGATGTCAGTTTCATCTCATTCTCTGAACATGGGTGCGGACGTGTGCTTCTTCCTCACAGCAGTTCAGAAAACCGCTGACCAGGCCAGTAACTCCGGCCCTTTCAGAAGAAAGAGAGGTGAGATCGTCATGGAGAGAGCGTGGCTTGTGGCCAGGTGGAGTATTTATACGTCTGGAGAGGTCAGTTTACAGTGATCGATCAGGTTGGCTATAGCAGATTCACAcccacttttttgttgtttgtttgtttctttgctctATTAAAATGGGTTGTATAGTTTATTGAAGTATTTCCCTGGTACAtagaatgcatttcaatttcctGTAGAAGTCACAGTGAACCTGCTGATGATTGTAAAAAGAGGTTGACACACAAAAACCTTATAGGGCTTTCCCTTAGCTCAGTCAGGGGGGGGGTTAAAATGTCCATCAACCtgatttatgattattttgcatgctattgtaatgtattctgatttttttttttcaaagaataaACTAC
>TU15144
CTGAAGCCCAGCCTTTGCATTCCAGCGCTCCGTGAAGAGGCAGCTCCGCTTATTAGGAGCGAGAGGGAGGAAGTTTCTGCAGCTGGGATTATGCGCACAGTTTTCTTGCCCAGAAGCTTTGCCTTTTCCCCTCCCACTCTTGTAGCAGCGCTCCCATAAACTACGGTTGAGACTGAAAAACTTATGCCTGCATCTCCAGGTAGCCAAGCTTTTGGACGGGATTCTGagccacactttttttttttttttttttttttttttttccgttttgtgttgtttgcatctttgtttggttttgtatggtgttctttgtttggtttgataTCAGGATAACTCTTTTGGTTGCTTTTGCATCGTACTGAAGAGGATTAGTGGACTTGATTGGAGTGGAGCACGCTGAAAGTGCACAGCTGCATAGTGCAGAAGCCGACTCTTCGGCTGACAGGCAATTAAAGCAGCTCTCCTGGGGGGCCTCAGTTTGGCAGCTCCAAGTTACTGCCTGGTGCATTAGCAAGCTCTCCCGAAACTCAAAATGGACTGGATCAGGAACTAAAGAACCTGGCGCACTTAGGGCGTACAACTGTTGCCCTCAATGgaGCATCAATTGGATTTTAAGCCCGAATGTGGATTCGCCTCCCAACAGGATCAGCACATGAGAGCGGAGAGAGAGTCAGATGTCCCAAAGCCTGAGAAAACAACAGGTTTGGggcTCATCTGTAACTTCTTTTTCATAGACACATTAACagtaaagAAAATCACTGAGAAACAGAAGCGGCCCAGTCATAGAATGGAAATTCTGGATTTAAGtttaagatTTGGAAAGCTGCACATGAAACAAGAGCATCACAAAGGACCATGAAGTCAAAGGGATGCTCGGGGGTCTGCGGGAAACTTCTCTACGCCAAAAGTGGAAGCTgcatcagttttctttttcttattttctttttttaaataaatgggaaaTGCACTTGGATATATTACTTCAGAGTGAACCAAAAACATTGCTGGTAAAGGTCTCTGCTGTACCATATTCAACTTCAATGTGagatttatgtttgtttgtttgtttgtttttttaaatcaaataaaaataaaaaataaatctttct
>TU15146
caaacacacagtcgGGGGCATCCGAAACAGCGCAGAAAACCAACATGACCTTGACTTTCTTGAAAGAGAGTTATTTTTTCTCACGCcctgcaaaacttttttttcctttaattttttatttcaccTTCTGGCAGAACATGGCTTTTTtaaatttacctttttgttgGCATCGCTTCCTTGTTACTTTCAAAAAGTGTCTCACAAGGGCCGAAAAAAAGAGTTTCTGTGATTACAGtaaagAAAATCACTGAGAAACAGAAGCGGCCCAGTCATAGAATGGAAATTCTGGATTTAAGtttaagatTTGGAAAGCTGCACATGAAACAAGAGCATCACAAAGGGTGCGGACGTGTGCTTCTTCCTCACAGCAGTTCAGAAAACCGCTGACCAGGCCAGTAACTCCGGCCCTTTCAGAAGAAAGAGAGGTGAGATCGTCATGGAGAGAGCGTGGCTTGTGGCCAGGTGGAGTATTTATACGTCTGGAGAGGTCAGTTTACAGTGATCGATCAGGTTGGCTATAGCAGATTCACAcccacttttttgttgtttgtttgtttctttgctctATTAAAATGGGTTGTATAGTTTATTGAAGTATTTCCCTGGTACAtagaatgcatttcaatttcctGTAGAAGTCACAGTGAACCTGCTGATGATTGTAAAAAGAGGTTGACACACAAAAACCTTATAGGGCTTTCCCTTAGCTCAGTCAGGGGGGGGGTTAAAATGTCCATCAACCtgatttatgattattttgcatgctattgtaatgtattctgatttttttttttcaaagaataaACTACATATTTCCATCACTGTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016241 False 511 mRNA 0.41 3 13387962 13389617
TU15144 True 1109 lncRNA 0.43 7 13271584 13377103
TU15146 False 828 lncRNA 0.40 5 13352208 13389636

Neighbor

gene id symbol gene type direction distance location
AMCG00016239 usp25,LOC107653727 coding upstream 24568 13212058 ~ 13247016 (+)
AMCG00016240 NA coding upstream 83191 13185034 ~ 13188393 (+)
AMCG00016231 NA coding upstream 208076 13037182 ~ 13063508 (+)
AMCG00016237 NA coding upstream 250383 13020983 ~ 13021201 (+)
AMCG00016230 NA coding upstream 298037 12960048 ~ 12973547 (+)
AMCG00016242 NA coding downstream 55402 13445038 ~ 13455916 (+)
AMCG00016249 atg101,LOC107751375,LOC107686213,LOC107589731 coding downstream 193408 13583044 ~ 13588973 (+)
AMCG00016250 NA coding downstream 208198 13597834 ~ 13617644 (+)
AMCG00016256 NA coding downstream 287358 13676994 ~ 13705883 (+)
AMCG00016255 uvrag,LOC107577365,LOC107589407,LOC107686127,LOC107691651 coding downstream 317578 13707214 ~ 13714691 (+)
G12214 NA non-coding upstream 171001 13042242 ~ 13100583 (+)
G12220 NA non-coding upstream 197832 13071571 ~ 13073752 (+)
G12217 NA non-coding upstream 205646 13065219 ~ 13065938 (+)
G12209 serpinh1b,LOC106613072,LOC107666206,LOC107588392,LOC107756564,LOC106581278 non-coding upstream 292068 12978278 ~ 12979516 (+)
G12183 NA non-coding upstream 368010 12903352 ~ 12903574 (+)
G12289 NA non-coding downstream 83852 13473488 ~ 13473785 (+)
G12330 NA non-coding downstream 156763 13546399 ~ 13546598 (+)
G12331 NA non-coding downstream 161958 13551594 ~ 13551858 (+)
G12347 NA non-coding downstream 248666 13638302 ~ 13639588 (+)
G12368 NA non-coding downstream 267757 13657393 ~ 13659659 (+)
AMCG00016221 NA other upstream 484685 12778224 ~ 12786899 (+)
AMCG00016213 NA other upstream 810319 12435136 ~ 12461265 (+)
AMCG00016202 NA other upstream 1265632 11992972 ~ 12005952 (+)
G11921 NA other upstream 1399849 11868825 ~ 11871735 (+)
AMCG00016174 NA other upstream 2313552 10844127 ~ 10958032 (+)
G12348 NA other downstream 232243 13621879 ~ 13627711 (+)
G12349 NA other downstream 241649 13631285 ~ 13631797 (+)
G12351 NA other downstream 245806 13635442 ~ 13637001 (+)
G12587 NA other downstream 1048135 14437771 ~ 14438606 (+)
AMCG00016288 NA other downstream 1355680 14745316 ~ 14783535 (+)

Expression


Co-expression Network