AMCG00016242


Basic Information

Item Value
gene id AMCG00016242
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13445038 ~ 13455916 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016242
CAGTGCCTGATGTGGCTGTGCTTTGTTCCGTCAGGTTTGGCACAGGGACTGGACATCACATCCACCACCCCATCATCCATTGAAAAGGCAAGCAATGGGAATGTGAAGCTGGACTGTGAGTTCACCCTGGCCCCTGAGGACTCTGGACCCCTGGACATAGAGTGGAGTTTGTTGGCATCAGACAACCAGAAAGAAGACAAAGTGATTATCCTGTACTCCGGGGACCGGGCTTATGAAGATTACTATGATGCTATGAAAGGCCGAGTTCACTTCAACTCGGCCGACCCCAAGAACGGTGATGCTTCCATCAACCTCACAAACCTGAAGTCGACCGACACTGGCACTTACCAATGCAAAGTAAAGAAGGCCCCCGGCATCAAGAGCAGGAAGATCCTCCTCACAGTTATGGTGAAGCCGTCCAAACCGAGGTGCTATGTTGAAGGGTCTTCCGAGGTGGGGAAGGACTTTGTGCTGAAGTGCCAGTCTGCTGAAGGCACGAACCCCATGGAGTACACTTGGGAGAGGCTGACGGACAACAAACTACTGCCTGCCAACGCAGAACTCGACAGAGTAAGCGGGACAATGAAGGTGAAGAACGCATCTGCCAGTACCTCTGGGACGTACCGCTGTACCGCCAAAAACAGAGTCGGCACGGAGCAGTGCGTGGTCCAGTTCACGGTGGTGCCTCCCCCCAACACCGCGGGCGTCATCGCAGGAGCCATCATTGGAGTCCTCCTGGCCCTCCTCCTTGTTGCCATCATCCTGTTCTGCTGCTGCCGTGCACGCAACAAGAAGAAGTACGAGAAGGAGACCTCCTATGAGATCAGGGAGGACGTGCCCCCTCCTAAGAGCCGCATGTCCACGGCGCGCAGCTACATCGCAGGCAGCCAGCACTCCTCCGTGGGCTCCCTGTCCCCCTCCAACATGCACGAGTATGGCAAGTCGCAGTATGACAAGATCCCCACGGACGAGTTCGAGCGGCCGCCCAGCCATGCCCCTGTGCCGCCCCCCGCCAAGTTCCTCATGTCctcaacaaccaccaccaccactgccaAGTGA

Function

GO: NA

KEGG:

id description
K06788 CXADR, CAR; coxsackievirus and adenovirus receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016242 True 1059 mRNA 0.57 7 13445038 13455916

Neighbor

gene id symbol gene type direction distance location
AMCG00016239 usp25,LOC107653727 coding upstream 198022 13212058 ~ 13247016 (+)
AMCG00016240 NA coding upstream 256645 13185034 ~ 13188393 (+)
AMCG00016231 NA coding upstream 381530 13037182 ~ 13063508 (+)
AMCG00016237 NA coding upstream 423837 13020983 ~ 13021201 (+)
AMCG00016230 NA coding upstream 471491 12960048 ~ 12973547 (+)
AMCG00016249 atg101,LOC107751375,LOC107686213,LOC107589731 coding downstream 127128 13583044 ~ 13588973 (+)
AMCG00016250 NA coding downstream 141918 13597834 ~ 13617644 (+)
AMCG00016256 NA coding downstream 221078 13676994 ~ 13705883 (+)
AMCG00016255 uvrag,LOC107577365,LOC107589407,LOC107686127,LOC107691651 coding downstream 251298 13707214 ~ 13714691 (+)
AMCG00016254 uvrag,LOC106603537,LOC106567946 coding downstream 270455 13726371 ~ 13742178 (+)
G12214 NA non-coding upstream 344455 13042242 ~ 13100583 (+)
G12220 NA non-coding upstream 371286 13071571 ~ 13073752 (+)
G12217 NA non-coding upstream 379100 13065219 ~ 13065938 (+)
G12209 serpinh1b,LOC106613072,LOC107666206,LOC107588392,LOC107756564,LOC106581278 non-coding upstream 465522 12978278 ~ 12979516 (+)
G12183 NA non-coding upstream 541464 12903352 ~ 12903574 (+)
G12289 NA non-coding downstream 17572 13473488 ~ 13473785 (+)
G12330 NA non-coding downstream 90483 13546399 ~ 13546598 (+)
G12331 NA non-coding downstream 95678 13551594 ~ 13551858 (+)
G12347 NA non-coding downstream 182386 13638302 ~ 13639588 (+)
G12368 NA non-coding downstream 201477 13657393 ~ 13659659 (+)
AMCG00016241 NA other upstream 55402 13271584 ~ 13389636 (+)
AMCG00016221 NA other upstream 658139 12778224 ~ 12786899 (+)
AMCG00016213 NA other upstream 983773 12435136 ~ 12461265 (+)
AMCG00016202 NA other upstream 1439086 11992972 ~ 12005952 (+)
G11921 NA other upstream 1573303 11868825 ~ 11871735 (+)
G12348 NA other downstream 165963 13621879 ~ 13627711 (+)
G12349 NA other downstream 175369 13631285 ~ 13631797 (+)
G12351 NA other downstream 179526 13635442 ~ 13637001 (+)
G12587 NA other downstream 981855 14437771 ~ 14438606 (+)
AMCG00016288 NA other downstream 1289400 14745316 ~ 14783535 (+)

Expression


Co-expression Network