AMCG00016279 (hlcs)


Basic Information

Item Value
gene id AMCG00016279
gene name hlcs
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14296362 ~ 14298779 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016279
TGCTCTGTCTGCCTTTTCTTGGCAGGCCGCGGAGGCAACGCGTGGCTCAGTCCACTGGGCTGTGCAATGTTCACCCTTCATGTCCGTGTGCCCGTCTGCTCACCGCTGGGCCAGAGGATCCCCTTTCTTCAGCACCTGGCAGCCCTGGCCGTGGTGGAGGCAGTGCGCGGCCTGCCCGGATACGAGGACATTGACCTGAGAGTGAAGTGGCCCAATGACATTTACTACAGTGATCTAATGAAGCTGGGCGGAGTCCTGGTCACCTCCACACTTATGGGATTAACTTTCCATGCTCTCATTggctGTGGCTTCAATGTGAGCAACAGCAACCCAACCATCTGTATCAATGACCTGATTGATCAGCACAACAAGGAGAAGGGTGCCGCCCTTGCCCCCTTGAGCACCACTCAGCTGATTGCCCGCAGCGTGACAGTCCTGGAGCAGCTCATTGCATCTTTCCAGGAACAAGGCCCAGAGGGTGTTGTCTCCCTGTACTACAAGAGATGGGTGCACAGCGGTACCCAGGTGCGCCTCGGCAGTGAGACGGGCCCACAGGTGGCCGTGGTGGGCCTGGATGACAACGGCTTCCTGCAGGTGGAGTCTCAGGAGCAGGGCGTGGTGTCCGTGCAGCCGGACGGCAACTCCTTCGACATGCTGAAGAACCTCATCGTCACCAAGCAGCGCTGA

Function

symbol description
hlcs Predicted to enable biotin-[acetyl-CoA-carboxylase] ligase activity. Predicted to be involved in histone biotinylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in holocarboxylase synthetase deficiency. Orthologous to human HLCS (holocarboxylase synthetase).

NR:

description
PREDICTED: biotin--protein ligase isoform X2

GO: NA

KEGG:

id description
K01942 HLCS; biotin---protein ligase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016279 True 687 mRNA 0.59 4 14296362 14298779

Neighbor

gene id symbol gene type direction distance location
AMCG00016271 NA coding upstream 13772 14270317 ~ 14282590 (+)
AMCG00016272 NA coding upstream 32289 14258609 ~ 14264073 (+)
AMCG00016273 dscr3 coding upstream 62734 14223888 ~ 14233628 (+)
AMCG00016270 NA coding upstream 119232 14176792 ~ 14177130 (+)
AMCG00016269 kcnj6 coding upstream 133934 14161493 ~ 14162428 (+)
AMCG00016278 NA coding downstream 50193 14348972 ~ 14383679 (+)
AMCG00016285 cblb,LOC107576804,LOC107699267 coding downstream 203355 14502134 ~ 14503691 (+)
AMCG00016286 cbl,LOC102193754 coding downstream 241662 14540441 ~ 14575549 (+)
AMCG00016292 NA coding downstream 519096 14817875 ~ 14827375 (+)
AMCG00016290 NA coding downstream 531948 14830727 ~ 14843857 (+)
G12489 dyrk1a,LOC107744208 non-coding upstream 99728 14194935 ~ 14196634 (+)
G12487 NA non-coding upstream 111676 14182605 ~ 14184686 (+)
G12406 NA non-coding upstream 465475 13829734 ~ 13830887 (+)
G12368 NA non-coding upstream 636703 13657393 ~ 13659659 (+)
G12347 NA non-coding upstream 656774 13638302 ~ 13639588 (+)
G12549 NA non-coding downstream 85126 14383905 ~ 14384657 (+)
G12566 NA non-coding downstream 98470 14397249 ~ 14398414 (+)
G12589 NA non-coding downstream 150033 14448812 ~ 14449212 (+)
G12591 NA non-coding downstream 152731 14451510 ~ 14451754 (+)
G12605 NA non-coding downstream 277808 14576587 ~ 14615709 (+)
G12351 NA other upstream 659361 13635442 ~ 13637001 (+)
G12349 NA other upstream 664565 13631285 ~ 13631797 (+)
G12348 NA other upstream 668651 13621879 ~ 13627711 (+)
AMCG00016241 NA other upstream 906726 13271584 ~ 13389636 (+)
AMCG00016221 NA other upstream 1509463 12778224 ~ 12786899 (+)
G12587 NA other downstream 138992 14437771 ~ 14438606 (+)
AMCG00016288 NA other downstream 446537 14745316 ~ 14783535 (+)
AMCG00016329 NA other downstream 2185576 16484355 ~ 16486003 (+)
G13012 NA other downstream 2818014 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 3263639 17562418 ~ 17599581 (+)

Expression


Co-expression Network