AMCG00016281


Basic Information

Item Value
gene id AMCG00016281
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14420356 ~ 14427290 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016281
ACTGTGCACAACATCAGCAAGATTTGCTGCATGCAGGAACTGATGAAGAAGCTGGCAGTTAAGTATAGTTTTCACAGGAAGAGGGGACAGGAAAGACTCACGGGTGTATAATACGCGCAGCTTCAGCATAGAGAACCACTTGTCTCCACAATGGTTTCTCCGCTGCTATCGCTTTTTACGGTCTGCACAATTCTCACAGCATGTATGGCTTTCACAGATAACATCACAGAAGCTTTGAAAGGCAGTTCTGTCATTCTTTTCTGCAAAATTTCCTTTGATTCACAGACTGATTCAGACCTTATTTCAGTTAAGTGGAGGAGAGTTGAAAGCTCCAGAAAAATCTGTGAATACCTTGTACAAAATGAGACTATCATCCTAAACAGCTGTGATAACCGGATAGTGGTCAAATGGACACCTCACCAAATTGAAATCAAAGATATTGAGACCAAGGACACAGGTCAATATTCATGCACTGTTTCAAGACAGATACCCCCACCAGTGGAGGAGAAAGAATACACCATGAATCTTTCAGTACAAGCTCCCCCAGTCATGAAACTGGATATTGTGAACATCTCTTACAATCGCTCTGAGCAATGCATCAGCCTGGTCTGTCTGCTGGAGTCCTTCAGACCTCGAGGAATTAACATCACATGGACCAGAAAGGGAGAGTGGATATCGGAAGGGGTGACCTTCAATGATTCGGTTCTGTCCAATGACGGCTCTTTCAGCGCGGCCAGTTACCTGACATTTTGCGCACCAAACTTGGAGGAGGAAGGTCTGATCTCTTGCCTCGTAAACCACACTGCCAGTCCCGTCATCCTTAATAAAACCATCACTGTTCCTCCAAAGAAAGGTCGCACACTGAGAATCACATGCAGTAATCAGCCCACTGTCTATACCAACGAGGTGTATGAGAACCTTAGTTTTGGCACGTTGGTAACGCAGACAGAGAGGACATCACAGGACGAGAGTagtagtaaatgtatttatgaaaacTAACTGCCCTGAGTGCAGTGTGACCTCaacactttcatttatttttccctcactgtggcCACAGCATGTCTGaatgtatctgtttgtttttatatcacTTTTTGATACAGTCTGACTGTAATGTCATCCATGACCCTAAGTGAATAACTGTAGGTCTGTACCCTAGCCTGGCTGTTAATATTGTAACAGTCATCTCCAGCCTGGTCTTGAGGATCATCTGTCTTCTTAATGTCATAgctcaccctaaatcaccaatttgtACTTGCAACGTGTGAGTAATTAATCAGTTAAGCGAGGCAAGCAAGGGAACTGGAGGAAGTCAATAAATTATTCCAGTGGTTTCTAAATGAATGAgattataaacaattaatgaagtacttccaggtgtttaaaAATTTGTGACAGAAGAGTGACCTCTCAAGCCACCTGGACaagggctctccaggaccataGTTGGAGATGCCTGGACTATAATTACAACACAAGAAAGTAAACCTGTAACACAGTGTGTTTGGTTTCATATTGAAAACTGTATGTAACGTTTTGTTAAATTGGGTGTAAATGGATTCTCCTTcctgccatttatttttccccagttTAGCCTATGTGAGTCTGAATGTGTTGGTAAAGATGTGTGTGTTCATACATTACACATGGTTCTATATATTTGTGCACCATAACTGGTATCCTTGTTTTTATATCAAACTTATGTAAAGCTCCTGTGTACGTGTCCTTTCTCTTGTTTCTGGCCATGTTTACAGGAGGTGCAGATGCTGAGGtgctgacaaaataaaacagctgatGATATTCTCTAAGTGCTCCATTTCATTGTGGGCCTGTCCTTTTTCAGAGGTTCTCATTATGTTGTTGTCTCTTAAGTCTGA
>TU15533
GTGAATTACAGTCCCCTTTCTTCAGCGCCTGAAGCACTTTCTCCTTGTATGGATACTGTGCACAACATCAGCAAGATAACATCACAGAAGCTTTGAAAGGCAGTTCTGTCATTCTTTTCTGCAAAATTTCCTTTGATTCACAGACTGATTCAGACCTTATTTCAGTTAAGTGGAGGAGAGTTGAAAGCTCCAGAAAAATCTGTGAATACCTTGTACAAAATGAGACTATCATCCTAAACAGCTGTGATAACCGGATAGTGGTCAAATGGACACCTCACCAAATTGAAATCAAAGATATTGAGACCAAGGACACAGGTCAATATTCATGCACTGTTTCAAGACAGATACCCCCACCAGTGGAGGAGAAAGAATACACCATGAATCTTTCAGTACAAGataataAGTGCTGCAATCAGAACTGGATCATCATCGTGGTTCCCTGTGTCCTTATGTCAGCAGGGATTTTGGTGGCAAGTGGGCTTTGTTACCATTTTGGGAAATGTCGCACACTGAGAATCACATGCAGTAATCAGCCCACTGTCTATACCAACGAGGTGTATGAGAACCTTAGTTTTGGCACGTTGGTAACGCAGACAGAGAGGACATCACAGGACGAGAGTagtagtaaatgtatttatgaaaacTAACTGCCCTGAGTGCAGTGTGACCTCaacactttcatttatttttccctcactgtggcCACAGCATGTCTGaatgtatctgtttgtttttatatcacTTTTTGATACAGTCTGACTGTAATGTCATCCATGACCCTAAGTGAATAACTGTAGGTCTGTACCCTAGCCTGGCTGTTAATATTGTAACAGTCATCTCCAGCCTGGTCTTGAGGATCATCTGTCTTCTTAATGTCATAgctcaccctaaatcaccaatttgtACTTGCAACGTGTGAGTAATTAATCAGTTAAGCGAGGCAAGCAAGGGAACTGGAGGAAGTCAATAAATTATTCCAGTGGTTTCTAAATGAATGAgattataaacaattaatgaagtacttccaggtgtttaaaAATTTGTGACAGAAGAGTGACCTCTCAAGCCACCTGGACaagggctctccaggaccataGTTGGAGATGCCTGGACTATAATTACAACACAAGAAAGTAAACCTGTAACACAGTGTGTTTGGTTTCATATTGAAAACTGTATGTAACGTTTTGTTAAATTGGGTGTAAATGGATTCTCCTTcctgccatttatttttccccagttTAGCCTATGTGAGTCTGAATGTGTTGGTAAAGATGTGTGTGTTCATACATTACACATGGTTCTATATATTTGTGCACCATAACTGGTATCCTTGTTTTTATATCAAACTTATGTAAAGCTCCTGTGTACGTGTCCTTTCTCTTGTTTCTGGCCATGTTTACAGGAGGTGCAGATGCTGAGGtgctgacaaaataaaacagctgatGATATTCTCTAAGTGC

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05310 Asthma

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016281 True 1880 mRNA 0.42 5 14420356 14427236
TU15533 False 1463 lncRNA 0.40 4 14420421 14427290

Neighbor

gene id symbol gene type direction distance location
AMCG00016283 tiprl coding downstream 26695 14389509 ~ 14393661 (-)
AMCG00016284 NA coding downstream 30877 14383900 ~ 14389479 (-)
AMCG00016280 sim2,LOC108234774 coding downstream 96181 14306299 ~ 14324175 (-)
AMCG00016277 NA coding downstream 151041 14268166 ~ 14269315 (-)
AMCG00016276 NA coding downstream 152541 14267636 ~ 14267815 (-)
AMCG00016282 NA coding upstream 10098 14437388 ~ 14456052 (-)
AMCG00016287 NA coding upstream 150567 14577857 ~ 14591958 (-)
AMCG00016289 zpld1,LOC105030973,LOC103372413 coding upstream 282098 14709388 ~ 14733458 (-)
AMCG00016294 NA coding upstream 422560 14849850 ~ 14851113 (-)
AMCG00016303 NA coding upstream 710118 15137408 ~ 15139859 (-)
G12373 NA non-coding downstream 760697 13657443 ~ 13659659 (-)
G12358 NA non-coding downstream 780766 13638303 ~ 13639590 (-)
G12359 NA non-coding downstream 781206 13627255 ~ 13639150 (-)
G12235 NA non-coding downstream 1320132 13097991 ~ 13100224 (-)
G12096 NA non-coding downstream 1781658 12638493 ~ 12638698 (-)
G12585 NA non-coding upstream 335 14427625 ~ 14428817 (-)
G12594 NA non-coding upstream 4322 14431612 ~ 14436531 (-)
G12595 NA non-coding upstream 36327 14463617 ~ 14463823 (-)
G12702 NA non-coding upstream 765912 15193202 ~ 15193641 (-)
G12707 cntn5 non-coding upstream 989733 15417023 ~ 15417518 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 861172 13543348 ~ 13559184 (-)
AMCG00016226 NA other downstream 1549796 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 2091323 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 2473034 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 2638809 11766152 ~ 11781547 (-)
AMCG00016293 NA other upstream 357908 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 2043321 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 2431251 16858541 ~ 16861179 (-)
AMCG00016345 NA other upstream 2439028 16866318 ~ 16870002 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 2836311 17263601 ~ 17266747 (-)

Expression


Co-expression Network