AMCG00016287


Basic Information

Item Value
gene id AMCG00016287
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14577857 ~ 14591958 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016287
ATgtattggttgttttttttaatcctccCGCCTTTGACTGTTTCAGTGTGCCGTTCTGAGGGGGTGACCGCGCTGTACGGAGGTACGATCCAGGTGCCATGCAACAAAGGGGCTCCCATGCCCGAGGATTTAATGTTTGTGAAATGGAAATACGCACAGAAAGAGGATGTTAAAATTGTAGCTGAAAATGATTACAAGGACCGAATCTCGGTGGCCACCAACTACAGCCTGCTGATCAGCCAGGCCAAACTGCAGGACCAGAACACGTTCACCTGCATGGTCGTCACCCCAGGGGACATCACAGAGTACTCCGTCACCGTCCACGTGTACAAGCTGCCTGACACGCCTCAGATCAAAGGCAAGGCCACCCAGCTGGAGAATGGAAAACTGGCTAAGGTGGGAGACTGTGTTGCAGAAGCTGCTAGTCCTGCAGGAAACATTATGTGGTCCAAGAATGGGAAGCCTCTGGTTTCAGATGGGAACTTAATTTTCATCAACAGCTCCGTGCAGATAGACAAGGCCACCGGTCTCTCCACTACATTCTCCAGGCTGGACTACACAGCCAGCAAAGCGGACGTGGGAGCAATGTTCACCTGCTCCGTCCAGCACGTCCTGGGGTCCAATCAAGTATCTGCTGCCGAGACCTTCCCCATCCACTATCCCACAGAGAAAGTCAGTGTACAGGTGCTCAACAAGGTTCCCATCAAAGAGGGAGACAACGTGACCATAAAGTGCACTGCTGACGGGAACCCCCCTCCCACCAGCTACAATTTCTACATTAAGGCAAGTTGTCTATCATTTGATTTCAAGCAAAATTGCGGCAGGCAAGAGAAGGTGATGTCAGACACGTACACTCTGACCGGGGTGACGCGGCAGGACAGTGGGGAATACAACTGCTCCCTTGTCGAGAACGACAAACTCATGGATTCGACCAGCATCGTTGTACACTACCTGGAGGCCAGTCTGAACCCGACAGGCCAGATCACTGGGATGGTTGGCGACAGCGTGAACATCACACTGCAGAAACAATCCTCTGTAGAAATGAAGGTTTCTTGGATGAAGGATAATGGCAAGACTGAAGAACCCAAACTGAGCAAGCTGAGGTACCAGGATGCAGGCTACTACGTCTGTGAAGTGTCTGCTGTCGGGTTACCGGGAGTAAAGAAGAGCTTTGCTTTTGAACTGACTGTTGAAgGGAAGCCACAGGTCAGTAAGCTCACCAAAACCAGCAGTAGTGATGGGAAGCACAAGGTACTGAGCTGTGAAGCCGAGGGATCTCCGAAGCCAATTGTCCGATGGAACATCAACGCCACCACTGAGAAGGAGAGCCCCTACATCAACGGAAAGTTCACCCACACCATCACTGTGGTTCCCCCGGGAAATGTCACTGTCACCTGCACAGCCAGCAACAAGCTGGGCGAGCACGAGCGCTCCATCAGCGTGTCATCTTTCATTGTTGATGAGGATGACCATGAAACCGACAAGTCGGAAGACGTGAATGACCAGGCCAAGCTGATCGTGGGCATCGTGGTGGGGCTGTTGGTGGCCGCCCTCATCGTGGGGCTGGTGTACTGGCTGTACATGAAGAAATCAAAacaAGGAACCTGGAAAACCGGAGAGAAGGAAGCTGGAACTTCAGAGGAGAGCAAAAAGCTGGAGGAGAACAACCACAAGGCAGAAGTGTAGAGACCACGGTGGCAGTGGAGAGATGAGGTGAGGCTGTCGCACACTTTAAACACGCTAATTAATGAGCCCGTGTGAGGAACTCGGAAGCCCTGTGGATGTCTGTGCGGCACAGATTGTAAACCTACCGTTTGTCTTCCAGGGAAGAAGCCGTAACGAGATGCCTTTCACATTGGACTTGCTGTCTAGAGAAAAAGCAAACgaatgacacaaacacacaaactatcTGGAAAGCCATTTGATTGGACGCCATCCTTCAAGCTTTTAACGCACAGCACGTTCAGTGGAAACCATTTTAAAGACAAGCCAGAACTGTACAGAATTAGCGTAACTACCGccaacatttaaagaaaagctcaatggaaatatttgtgttgtatatggattttttttttgcccccccgcccctctcCCCTGAGTCTGCACTgaaacttttgttgtttttccctccTTGTGTTCCTGGTGAATGCCTTTGTTTGATACACTATTTGTTGGTTCAGTGGGTTTCCTGTTTTGTTCAGCtccttttgtttatatttttttctgctttagtaaaaatgtaaattctcGGTACACTATTGACATCCATATAAGTATGTGAATTTCACGGGCGAGCAGAATCGTATCCGACCGCTGCCagatcaccccccccccccccccccccccccccccccccccccccccccc

Function

GO:

id name namespace
GO:0014033 neural crest cell differentiation biological_process
GO:0007409 axonogenesis biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0001947 heart looping biological_process
GO:0030424 axon cellular_component
GO:0042802 identical protein binding molecular_function

KEGG:

id description
K06547 ALCAM, CD166; activated leukocyte cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016287 True 2370 mRNA 0.50 14 14577857 14591958

Neighbor

gene id symbol gene type direction distance location
AMCG00016282 NA coding downstream 121805 14437388 ~ 14456052 (-)
AMCG00016283 tiprl coding downstream 184196 14389509 ~ 14393661 (-)
AMCG00016284 NA coding downstream 188378 14383900 ~ 14389479 (-)
AMCG00016280 sim2,LOC108234774 coding downstream 253682 14306299 ~ 14324175 (-)
AMCG00016277 NA coding downstream 308542 14268166 ~ 14269315 (-)
AMCG00016289 zpld1,LOC105030973,LOC103372413 coding upstream 117430 14709388 ~ 14733458 (-)
AMCG00016294 NA coding upstream 257892 14849850 ~ 14851113 (-)
AMCG00016303 NA coding upstream 545450 15137408 ~ 15139859 (-)
AMCG00016302 NA coding upstream 548403 15140361 ~ 15142142 (-)
AMCG00016304 NA coding upstream 550298 15142256 ~ 15358334 (-)
G12595 NA non-coding downstream 114034 14463617 ~ 14463823 (-)
G12594 NA non-coding downstream 141326 14431612 ~ 14436531 (-)
G12585 NA non-coding downstream 149040 14427625 ~ 14428817 (-)
G12373 NA non-coding downstream 918198 13657443 ~ 13659659 (-)
G12358 NA non-coding downstream 938267 13638303 ~ 13639590 (-)
G12702 NA non-coding upstream 601244 15193202 ~ 15193641 (-)
G12707 cntn5 non-coding upstream 825065 15417023 ~ 15417518 (-)
G12743 NA non-coding upstream 955092 15547050 ~ 15605487 (-)
G12807 NA non-coding upstream 1232953 15824911 ~ 15825237 (-)
G12809 NA non-coding upstream 1236808 15828766 ~ 15829026 (-)
AMCG00016281 NA other downstream 150567 14420356 ~ 14427290 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 1018673 13543348 ~ 13559184 (-)
AMCG00016226 NA other downstream 1707297 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 2248824 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 2630535 11832428 ~ 11947322 (-)
AMCG00016293 NA other upstream 193240 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 1878653 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 2266583 16858541 ~ 16861179 (-)
AMCG00016345 NA other upstream 2274360 16866318 ~ 16870002 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 2671643 17263601 ~ 17266747 (-)

Expression


Co-expression Network