AMCG00016289 (zpld1,LOC105030973,LOC103372413)


Basic Information

Item Value
gene id AMCG00016289
gene name zpld1,LOC105030973,LOC103372413
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14709388 ~ 14733458 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016289
ATGTTGGAGCCTCAGAGTTGGGAAACTGACGCCATTGTGGCTCCTACCGCTTTCCGACTCAGCTTAGATAAACAGTTCGGCCGAGAGAGCCAACATGGCGACCAGGACTCCAGGCTGCAGCGCTCACCATTCGATCACATGCGGCAGCCCAAAGCACATGGAGAACCGCTGACAGGGCAGCTTCCAGGGACCAGGTTCAATGGGTTTAACTGTGATGCCAACTACCACAGCAGATTTCCTGCTGAGCGGGACATTAGTGTCTACTGTGGGGTGCAGACTATCACCCTGAAGATTAATTTCTGCCCGGTGCTCTTCTCCGGGTACACGGACGCCGACCTGGCCCTCAATGGCCGGCATGGCGACGCTCACTGCCGGGGgttcatcaacaacaacacctTCCCCACCGTGGTGCTGTTCACCATCAGCCTCAGCACCTTGGAGTCCTGCGGGAACTCCCTGGTGGGTGTCAATGCCTATGGAAACCTCTCCCTGGTGCAGATTGGTAACGTATCAGGGTACATTGACACGCCAGACCCTCCGACTATTATCAGTTATCTGCCAGGACTGCTGTATAAATTCAGCTGCAGTTATCCTCTGGAGTACCTGGTCAACAACACCCAACTAGCTTCGTCATCTGCAGCTATATCTGTAAAGGACAACAATGGTACATTTTTAAGCACATTGAGTTTACTCCTGTACAatGATTCAACCTATGTCCAGCAGCTGTCCATTCCCATGGCCGGACTCACACTGAAGACTAAGGTGTTTGCAGCAGTAAAAGCCACCAATCTTGATAGAAGATGGAATGTTCTGATGGACTACTGTTACACCACCCCCTCTGGAAACCCCAACGATGAACTTCGATACGACCTTTTCTTTAGTTGTGACAAAGACCCGCAAACGACTGTTTTCGAAAATGGCAAGAGCCAAATGGGACGATTCTCCTTTGAAGTGTTTCGATTTGTCAAGCACAAAAACCAGAAGATGTCAACAGTGTTCCTGCATTGTGTCACCAAGCTCTGTAGGGTAGATGACTGCCCTTTACTCATGCCGatCTGTGGCAGCAGAAAGAAGCGAGACCTTTTGGAGACAGTGACTCCCAACCCAAAAGGTGCTTCTGGCAATGCTGTCATTACAGCTGGTCCTATAATCACTAGAAGTGATGAAACACCCACCAACAACTCACAGCTAGCGTACGATGACATCTCGGTGGCATGTGGCAGCAGCACCATGGATCTGGCGGTCCAGATCTGCCCAGCTGTGTATGCTGGCTACAACGAGTCCCTGCTGTACCTGAACTACGTGTTTGATGACCCCCGCTGCAAAGGAAAGCTGGACATCACTGTGACACCCCCCGTTGTCCGATTCAGCTTCCCAATTAACGAGTCAACGGGCTGTGGAAGCATCTTCAGGACGATAACCACACCTGGAACTGGGATTTTTTCAGACTTCTCCAATATCCAGACAGTAAACATCAGCGGGGTGATCCGATCAAATGATCCCACTATTGGCACTGTGACTTACAACCAGGAGCTGGTGTACCTGTATTCGTGTGCCTACCCACTAGAGTACCTTATCAACAACACCAGGATTGATgtGTCTGGGGCCTCCATCTCAGTGAAAGACAACAATGGCAGCTTCATCAGCACTCTCAGCCTGCAGCTATATAAGGATGTAAACTACACAGCACCGCTTATAATTCCATCATCAGGAATTGATTTGAAGAGTGACGTTTATGTGCAAGTCAAGGCTGTCAATTTAACATCCAAATTCAATGTCCTCCTGGATCGCTGCTACGCTACGACATCTCTGTATTCCACAAACTCAACCTACTTTAATCTCTTTGTATCTTGCTCCAGAGATGCCCTAACAACAATGATTTTAAACGGTGATAACCAGTACGCCAGATTTTCCTTCAAGGCTTTTCGCTTCATTGAGCAAAAAAATCTGACGGTTGCTACCTACTATTTGCACTGCATCACAAGGCTCTGTGACGTCAATTCCTGCAGTCAGTTCAAGAAATGCTCCAGGAAGAGAAGAAATGCCATTGAGACCACAACCCCTGTCCCAGATGGTCTCTCTGAAGCCACCACCATCACTTCAGTGCCAATCCATACCAAGGCAGAGACTGTCCTCCAGTCTAAAGAAGTCATTGCTGAAACCAAGGATGCCGTTTCGAGCATCTCTGTCGGTCTGGGAATAGCGGTGGCTTTCCTGGCTCTGATCTCCATTACAATGATAGCTATGGCCTACATGTTTTACCAAAAAACCAAGCAAGCAACGGGcatgaagaaaatgtttcctaACTAAATTTTTGCCATCATAAGACTTGTTTATATTAGCCGTTATATGTTGCAGACATGTTATATTAGTGTGACTATCTTATTACACTGCTGGTGGAGTACTGAGACTCGTCATGGCTGTGTTATTCAGATGTTGTTAGTTTGTCTATACATTGACATCTTCGTTTCTTAGCACCTTGCTAAATCCTTGTTTACTGAGCTCTGGACACCCCCAttccacccccaccctcctccaaaataaataattaaaaagcaaaaataaaagctaaattGTACTTTCagacaatttaattgaaaagctACACATGACAGAAAACACATAAAGAATTGCTACAACTAGGCTACGTGCAGTTGCCAAGTTCAGGTGAAATCAGGAAGGCAGCTGAGGTCGAAATTGTACAGTAAGTATTGGAAACTACAATTAGTGGGATCAAATAGTTATACATactcaaaatgtatatattgctaATTTAACAACAATCATctcaatatattacaaataattgcatttaataatatgCTGTACAGCAAAGtttataaaaaagtaaatattttataaaatattgtattttgtattgcttctaTCAGCTCTCCCATAATGCCTCCGGGCATGAGCAGAGCTAGCACTAAGACAGGAACACAGCGGGAGTAGGTCGGGATGTTTTCCAAGCAGGGAAAGCCATCTTGAAAACAAAGAAGTATAGAAGAGAAAAggtcaaacattttaatcttgATTCAGACCTCACCACAGTGAGTAAATAGGAACAGGTGTCAGGCAGGCGAAACAGGAACTTTTCCACTGTAGCCGAAAGCAAGTCACTAATGCTTCCTGTTCCCCTCACTCCACCAATTTTCCAGCTTTACTCAAAGATCAATCTTAAACCCAGCACTAGAAAAGTATCTTAAGTGACCACTGGactatttgttatgttttgttgattatatttattaattgatggAATAATTGtgaacacactttttttttgttccttagaTAGAATGCAATTCATCAACCATCTTTGACAGACATAATAAGAGTTCATGCATTTGGCTTCATATTTACACACTTCTTTCTGGCATATTGTTTATTGGCTTCAGTGTTCAAATAATTTGTCGTTTTAAGTTGTGTATATGTTGTAGAATTTCCTCATAAATGCTTGAATGACCACAGGGGGTGTGTTTATTAAAGCCTGCAAACCTTGAA

Function

symbol description
zpld1 Predicted to be an extracellular matrix structural constituent. Predicted to be located in cytoplasmic vesicle membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and extracellular space.

NR:

description
PREDICTED: zona pellucida-like domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016289 True 3507 mRNA 0.44 20 14709388 14733458

Neighbor

gene id symbol gene type direction distance location
AMCG00016287 NA coding downstream 117430 14577857 ~ 14591958 (-)
AMCG00016282 NA coding downstream 253336 14437388 ~ 14456052 (-)
AMCG00016283 tiprl coding downstream 315727 14389509 ~ 14393661 (-)
AMCG00016284 NA coding downstream 319909 14383900 ~ 14389479 (-)
AMCG00016280 sim2,LOC108234774 coding downstream 385213 14306299 ~ 14324175 (-)
AMCG00016294 NA coding upstream 116392 14849850 ~ 14851113 (-)
AMCG00016303 NA coding upstream 403950 15137408 ~ 15139859 (-)
AMCG00016302 NA coding upstream 406903 15140361 ~ 15142142 (-)
AMCG00016304 NA coding upstream 408798 15142256 ~ 15358334 (-)
AMCG00016310 NA coding upstream 823411 15556869 ~ 15564100 (-)
G12595 NA non-coding downstream 245565 14463617 ~ 14463823 (-)
G12594 NA non-coding downstream 272857 14431612 ~ 14436531 (-)
G12585 NA non-coding downstream 280571 14427625 ~ 14428817 (-)
G12373 NA non-coding downstream 1049729 13657443 ~ 13659659 (-)
G12358 NA non-coding downstream 1069798 13638303 ~ 13639590 (-)
G12702 NA non-coding upstream 459744 15193202 ~ 15193641 (-)
G12707 cntn5 non-coding upstream 683565 15417023 ~ 15417518 (-)
G12743 NA non-coding upstream 813592 15547050 ~ 15605487 (-)
G12807 NA non-coding upstream 1091453 15824911 ~ 15825237 (-)
G12809 NA non-coding upstream 1095308 15828766 ~ 15829026 (-)
AMCG00016281 NA other downstream 282098 14420356 ~ 14427290 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 1150204 13543348 ~ 13559184 (-)
AMCG00016226 NA other downstream 1838828 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 2380355 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 2762066 11832428 ~ 11947322 (-)
AMCG00016293 NA other upstream 51740 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 1737153 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 2125083 16858541 ~ 16861179 (-)
AMCG00016345 NA other upstream 2132860 16866318 ~ 16870002 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 2530143 17263601 ~ 17266747 (-)

Expression


Co-expression Network