AMCG00016290


Basic Information

Item Value
gene id AMCG00016290
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14830727 ~ 14843857 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016290
CAGAGCAGCCTGGTGCCACTTGTAAGACACCTGAGCCAAGAGGACAGCAAGACTGGCAAGATAAATGATCTaaaatccttctgggagaaggAGAAAAGTGGGCCAAAAATTATTATAGGAAAACCAAAAGATGTTACAGAGACTTGTTTCTCTGGGACTGAAGGAAAACAGCATCTAAAAGACAGCCCTTTGCAGTCCAGTAAAAGGTTTACTGCATCTGAGATAGATCTTAGGGTAGATGATGCTGATCCCAGCAATGGCATTGAGAGAAAGAGCACTTCCTCTGTGTCTAGATCAAAGCCTACTTTTACAGTTTTATCTATGAAGGAAAGAGTGCAAAATGATCCCATTGGTCCGACTAGCTTGCAGTTCAAGAACCTCCGTGACTTCTGGGGAGGGACATCCGCAGCACAGCAGAGGCCTTCTCTGGTCAAGCTGAAGTCAGGTTCCATTGAAAGCATGCCAGTTAATCTAAAAAACCCTACTAGTCCTACTTCAAAGGCTCAAGATAAAAATCTATTCCTTAACCCAAATTATTATGCCAAGGTCCTCCCAACTGAACCAGAAAGTATTCAAGGCAGGTCCTTTGGAGTAGAAGAACAGCCAATGAGAGAATCTAAGAATGAAACAGAGATGAAAGTAGAACAATCAGCACCTCAGCTGAGTGAGGGCAAGACCAACGTAGGCAAGGGTCCCCTGCCAGAAGCTTTAGCGAGAAAACCCCCTTCCCCAACTGTGTCTTTTCAAAGGCAAGGAGATTTGACTCATGGAAAAGATGTGGGAGCCGAGCAGGAGAGGTTTTTTAGTAGGGTTATGGAGCGGAGCAAAGGGTTTCCCCCTCAGGGGCAGAGTCCTCAATCTCCACCATTGAAGAGCATGGCCAGGAGTTCAGTGAGTTCAGAAGTGCCTTTGCAGACCTCAGGCACCAACGTCAGTGCGGTTTGCCCTCCTCAGCCAGccagaagaaaacacaaagaaagcCCAAATGAAAGACAATACCAAACGGTGCCTCAGCCCAGACTAGAAATGCATGAAGGAGACCTGCAAGAAAGACTGAACGAAATCCCTCCTGAGCCTTTCAATGGAACACATAACGGCAGTCCCAGCAAAGAGGAAAATGAATCAAAAGCACCTGTGATGAAGGAAGACCTAATCTTGAAGAAACATCAGAGCAATGTCCTTTCTCCTTGGGTGAAGCCGGCTGATGAAGAAATGTCTTTCCAAACCCAGGAAATTGAGGTCCCCGTGGGTATTGGAGAGAAAATGGAAACCCATAGTGTGCTACAGAGAGAGGATTTGCTAGAAGAAGATGATTCTGACCACGAGTTTGGGGAAGTAGCTAAGCCTGTCAGAGCCAGTACACCTAATATGGCAGAGGACATCCAGGGGAAGCCAAGCAGCGAGATGCAACACTCCTCGCCTCTCTGTGATAATACAGAAGACAACGAGTACGAGGATTCCTCCAGGAGCAGTGCATCTGACACCTGGTCTTTCACTTGGGCAAGTTCAGCCTGTTATGATGAAGACCAAAACCTGGTTAGGAGGGTCTTGGAAAGGAGCTCCAATAGGCCTGTATCTTCTTCAAAAAGTCTGGAGGACATTTCATCGTCATTGCCAAGAGACGAGAGAAGCAAAACCACTTCAGGGGATGAATTAGCACTTAGTGTGGAAGACgTTTCCACAGTGCCCAATACGCCAACCACCACGTTTTTAGACAACGAGAAGATGAAGCAAATGAGCAGATCTGTCCCTTTCCTGCAGCAAGAGAGTGATGGCACTGACTCCACCTCAGAGAACAGTTTCCACATTGGCAGAAAGAAGAAGATTGGCAGCTCTCTAACCAATCTTAGCAACTCTTCTGGCATGGCATCAATGTCCTCTGTCAGTGGCAGTGTAATGAGCATCTACAGTGGAGATTTCGGGAATGTGGAAGTCAAAGGGAATATTCAGTTTGCCATGGACTATGTGGAGCAGTTGAATGAGTTTCATATCTTCGTGGTCCAGTGCAAGGACTTGGCAGCTGCTGATCCCAAAAAGAACCGCTCAGACCCaTACGTTAAGAGTTACCTGTTACCTGACAAAGGAAAGATGGGTAAAAGGAAGACCTCAGTGAAAAAGAAGACTCTAAATCCGACCTACAACGAGATCCTTCGGTATAGAATCGCCATGGAGACTCTCAAGACTCAGACTCTGAATCTGTCTGTATGGCACAACGACACTTTTGGCCGCAATAGCTTTCTGGGTGAAGTGGATGTGGACTTATCCAAATGGGACTGGAACAACACACAAATGAACTTCTTCCCTCTGAAACCACGGGCAACAGACTACAGAGGAGAGATGAGATTAGCCCTACGTTTCCTCCCTCAGATCTCACACATGCTCCCAGACACCAGCAGGAAAAGCCGTCAGAAGACCCGGGTCCTGAAGAAGACGGCAAACCCTATGTTCAATCACACGCTGGTGTATGACGGCTTCAAGGCCGAGGACCTGCGGGAGGCCTGTGTGGAGCTCACCGTGTGGGACCACGACCGGCTCGTCAACCACTTCCTGGGAGGACTGCGGCTCGGCCTTGGCACGGGTAAAAGTTATGGGGCAGTCGTGGACTGGATGGACTCAAACACAGATGAAGCAACTTTGTGGGAACGAATGATTGACTCCCCGAATGAATGGGTGGAAGATGTCTTACCTTTGAGAATGTTAATGATGGCAAAGAGTGTGTGGAAATAGAGGAGGTtgtggaatgtatttttttatactgtatGAATACCTGCCAATTATTAATCAGCACCCCCTACCCCCTGGTCTGCCCTTTTAATATCCTCTGCACGGTACTGGAAATGCTCATATTTTGtggtaagaaaacaaacaagaaaaaaaaaatgtatgatattATTTTATCCAAAGTgcctcattaaaaatgtatcttagTGTCAAGTTATCTGAAAGATTAACATGTCTTATTATCAAATGTTGCATTAAGCCAAggtatgattttatttgtaacatGTTTACATTGGTTCTATATCTCACCTGCTAGATTAGGGACTTGTAATTGTTGTATGCCGTTCGAAAGACAATGTCAGAAATAAATGACATTAAgaaaaatgttctttatttgtgttttactgcCAAACAAATGTTGCATATATCTCTGCTATGTTACTTGTTCACTCAATTTATTACGTTAATGTTTACTTTCCAGCTCGTTTTCTGTAATCTATCAAATAATGACATACATATTGTCCAATTTAATTAGCATTGCTTTACAGTGTATTTCTATCTACAATAAAGTTTTAGACTCACAATGGCAA

Function

GO: NA

KEGG:

id description
K17598 SYTL; synaptotagmin-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016290 True 3311 mRNA 0.45 11 14830727 14843857

Neighbor

gene id symbol gene type direction distance location
AMCG00016292 NA coding upstream 3352 14817875 ~ 14827375 (+)
AMCG00016286 cbl,LOC102193754 coding upstream 255178 14540441 ~ 14575549 (+)
AMCG00016285 cblb,LOC107576804,LOC107699267 coding upstream 327036 14502134 ~ 14503691 (+)
AMCG00016278 NA coding upstream 447048 14348972 ~ 14383679 (+)
AMCG00016279 hlcs coding upstream 531948 14296362 ~ 14298779 (+)
AMCG00016291 NA coding downstream 979 14844836 ~ 14845843 (+)
AMCG00016295 NA coding downstream 92138 14935995 ~ 14944083 (+)
AMCG00016298 dlg2 coding downstream 144006 14987863 ~ 15041451 (+)
AMCG00016296 LOC107589373,LOC106951534,LOC102797415,LOC103129241,LOC106903426,LOC107100026 coding downstream 209188 15053045 ~ 15054925 (+)
AMCG00016297 dlg2 coding downstream 244022 15087879 ~ 15105018 (+)
G12605 NA non-coding upstream 215018 14576587 ~ 14615709 (+)
G12591 NA non-coding upstream 378973 14451510 ~ 14451754 (+)
G12589 NA non-coding upstream 381515 14448812 ~ 14449212 (+)
G12566 NA non-coding upstream 432313 14397249 ~ 14398414 (+)
G12549 NA non-coding upstream 446070 14383905 ~ 14384657 (+)
G12712 NA non-coding downstream 620220 15464077 ~ 15464312 (+)
G12763 NA non-coding downstream 897329 15741186 ~ 15743647 (+)
G12816 NA non-coding downstream 1075726 15919583 ~ 15924725 (+)
G12886 NA non-coding downstream 1689247 16533104 ~ 16533381 (+)
G12896 NA non-coding downstream 1764861 16608718 ~ 16608985 (+)
AMCG00016288 NA other upstream 47192 14745316 ~ 14783535 (+)
G12587 NA other upstream 392121 14437771 ~ 14438606 (+)
G12351 NA other upstream 1193726 13635442 ~ 13637001 (+)
G12349 NA other upstream 1198930 13631285 ~ 13631797 (+)
G12348 NA other upstream 1203016 13621879 ~ 13627711 (+)
AMCG00016329 NA other downstream 1640498 16484355 ~ 16486003 (+)
G13012 NA other downstream 2272936 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 2718561 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 3575160 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 5031199 19875056 ~ 19879725 (+)

Expression


Co-expression Network