AMCG00016293


Basic Information

Item Value
gene id AMCG00016293
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14785198 ~ 14791969 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016293
ATACaagtcaaaagaaaagaaatagaaGAGTTCCTGTCTGAAGTGAGCCAACTGGAGGAGAAGAACCAGAGATACAAGAAACGGAAGAAGCAGCTGACGGAGGAGCAGACGGGGCACATCCGCACTCTGCTGAAGCAGGCAAAGGAGCAGGAGCGCGACCTGGAGCAGAGCGAGGTGGTGAACAGGGAGCAGGTCGAGCAGGCCCAGAGAGAGTACTGGGAGCTGGCCAGGACCAGCGATCACCAACTGGAAGAGCTGCGCAGGGAGCTCCGAGGTCTGGAGCAAAAGGTCCTGGCGGGGCACAGTGAGAGACGCTGCTGGCTGGCGTACAAGACAGTGGGCAGCCAGGAGCACGGCCTGCAAGTCCAGCTGCTGGAGGGGGAACTCCGACAATTGCAGCGGGACTTTCAGGAGATAGCAGGTCTGTGTCTCTCGGTTCATTTTCCATGTGGTGGTGCTACGGCCATTAAACATCTTGGCAAACACAGCCGTCAGGAGATCAGGGAGAATGAATGGTTGAAAAAAGAGATAACAATTTACAATAGAGAAGTTGCTTTACTGGAGAATGCCGTCCAGAAACTGGAGGAGGAGAATTTGGCGATCGTAAATGAGATGTTTGAGCACAGACTGGGTAACCTGAAGATCTCCCGAAAGGTGTTCCTCACTGAGGCAGCTGGCCTAGATGTGATTGACACCGGGATGCTGGGGGAAGATTTCGACAAACTGTATCTCACTGATCAACCAGACGCACCTTCCAGACCTATACATTTCCTCCTGGCAGCAGCGGAAGGAGGGAACGGTCTCGGCGTACCCAGAGAACTGGAGGGAGATGAAAGAGGCGCCAGCTGCAGCCGGCCGGCCGACCAGCCAACTGCATCTCCCGCGCAGGATCTCAGAGTCGCGCTGTACGGGAGCCAGGTGAACTTTCAAGAGCCCATGCAGCTGGGGCCCCTGGAGCTGAAGCTGCTGAGTGTGGTGGGCCAAGCCATGCCCATTCATCAAGCCCAGTCCTCCCCAAGACAGGACTGTGGCCCCCGCACAGGGCGGGAGACAGAGGATTGGCCCGTTACTTCGAACATGATCCAGTCTAGATTTGGAGAACCGGCCCCCAGC
>TU15634
ttgcagatcACATCCAACGATCCTTGGATGTGACAGTTAGTGAAATTgataagaaaacagaaaagctgaTCGATGAGACGAAACATTTTGCTACAGAGACGGCCATTAAACATCTTGGCAAACACAGCCGTCAGGAGATCAGGGAGAATGAATGGTTGAAAAAAGAGATAACAATTTACAATAGAGAAGTTGCTTTACTGGAGAATGCCGTCCAGAAACTGGAGGAGGAGAATTTGGCGATCGTAAATGAGATGTTTGAGCACAGACTGGGTAACCTGAAGATCTCCCGAAAGGTGTTCCTCACTGAGGCAGCTGGCCTAGATGTGATTGACACCGGGATGCTGGGGGAAGATTTCGACAAACTGTATCTCACTGATCAACCAGGAAAAGAGAAGTgatttgaccacaagagggcacTGACTTAGTAGTTTTGCTACTGAAGGGCTCTGAGGATGTGCTGTTTATTATTCTCACCAAGCACCAAAACTGAAGTTCCTCTTGGGCTGTCACTGTATTTTAAGTCAGGTTTATTTTCACCTCGGAGGAAAACTTAATCTTTGTGGAACATGACATCAGCTGCACTGCCTGCTGTGAAAGGACTACACTTGCTCAGTTGCTGCGGAAGTGCGGCACAAGCGAGGAATTTGTTAACGGCCATCCCTTtcagtatatacaaaaaatcTTGGTAATTCATCTCTGATAAGAACAAAATAACTGGAGTCAGAGGAAGGCATGAAGCCATAACATCCCACACCCATTTCCCTTGCTTTATTTGTCAAAACACTCACTCGAGTTTTCCCTGatcaaaaaaaacaattacggTTATACTGTTATCACCCAGACATCACTGTAGG
>TU15638
GGTGCGGGATTTGTTTCCATGGGAGCGAGTGGAAATCATACGGTTCACACCGAAAAGCAGCGAGACGAGTCTGTACCGCAGCGGGAGACGGTAATCAACTTTTAAATATACACGCACGATAAGAGTTTCTAATataaacgtttttttttaatatgatttctGTAGTTGTATACTAATGCAGCTTTGTGTTTGCGTCCTGTAGCCTGCATACACTAGTATCACTGAGAACAGAATTACTTGCATTGAAATGAaccttgttttcattaaaaatagcaTACAATAATTGAAAGGGCTATTAAATTAAACGCAGTAATAGTTAATTCTCCAAATTCATTGCAACTGGGAACTGGGCCACTGGTTAGTGACAATGGGAAAGAAGAAACCTGCTGCCCCGGAGGACAAGATGACTTTAGCGGAGGCGTTCATAACTTTTCAAATACaagtcaaaagaaaagaaatagaaGAGTTCCTGTCTGAAGTGAGCCAACTGGAGGAGAAGAACCAGAGATACAAGAAACGGAAGAAGCAGCTGACGGAGGAGCAGACGGGGCACATCCGCACTCTGCTGAAGCAGGCAAAGGAGCAGGAGCGCGACCTGGAGCAGAGCGAGGTGGTGAACAGGGAGCAGGTCGAGCAGGCCCAGAGAGAGTACTGGGAGCTGGCCAGGACCAGCGATCACCAACTGGAAGAGCTGCGCAGGGAGCTCCGAGGTCTGGAGCAAAAGGTCCTGGCGGGGCACAGTGAGAG

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016293 True 1113 mRNA 0.56 8 14785198 14791045
TU15634 False 854 lncRNA 0.50 5 14786993 14788418
TU15638 False 747 TUCP 0.46 4 14790203 14791969

Neighbor

gene id symbol gene type direction distance location
AMCG00016289 zpld1,LOC105030973,LOC103372413 coding downstream 51740 14709388 ~ 14733458 (-)
AMCG00016287 NA coding downstream 193240 14577857 ~ 14591958 (-)
AMCG00016282 NA coding downstream 329146 14437388 ~ 14456052 (-)
AMCG00016283 tiprl coding downstream 391537 14389509 ~ 14393661 (-)
AMCG00016284 NA coding downstream 395719 14383900 ~ 14389479 (-)
AMCG00016294 NA coding upstream 57881 14849850 ~ 14851113 (-)
AMCG00016303 NA coding upstream 345439 15137408 ~ 15139859 (-)
AMCG00016302 NA coding upstream 348392 15140361 ~ 15142142 (-)
AMCG00016304 NA coding upstream 350287 15142256 ~ 15358334 (-)
AMCG00016310 NA coding upstream 764900 15556869 ~ 15564100 (-)
G12595 NA non-coding downstream 321375 14463617 ~ 14463823 (-)
G12594 NA non-coding downstream 348667 14431612 ~ 14436531 (-)
G12585 NA non-coding downstream 356381 14427625 ~ 14428817 (-)
G12373 NA non-coding downstream 1125539 13657443 ~ 13659659 (-)
G12358 NA non-coding downstream 1145608 13638303 ~ 13639590 (-)
G12702 NA non-coding upstream 401233 15193202 ~ 15193641 (-)
G12707 cntn5 non-coding upstream 625054 15417023 ~ 15417518 (-)
G12743 NA non-coding upstream 755081 15547050 ~ 15605487 (-)
G12807 NA non-coding upstream 1032942 15824911 ~ 15825237 (-)
G12809 NA non-coding upstream 1036797 15828766 ~ 15829026 (-)
AMCG00016281 NA other downstream 357908 14420356 ~ 14427290 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 1226014 13543348 ~ 13559184 (-)
AMCG00016226 NA other downstream 1914638 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 2456165 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 2837876 11832428 ~ 11947322 (-)
AMCG00016327 NA other upstream 1678642 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 2066572 16858541 ~ 16861179 (-)
AMCG00016345 NA other upstream 2074349 16866318 ~ 16870002 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 2471632 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 2746065 17538034 ~ 17541342 (-)

Expression


Co-expression Network