AMCG00016299 (cntn5)


Basic Information

Item Value
gene id AMCG00016299
gene name cntn5
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15379324 ~ 15406751 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016299
CTGGGTAACTTCAGCGGGCGGACGAGGGGAGCAGTGTCAGTGCGGGAAGGACAAGGCGTGGTCCTCATGTGTTCTCCACCACCCCACTCTCCAGAGATTACATATAGCTGGGTTTTTAATGAGTTCCCCTCGTTTGTGGCTGAGGATAGCAGGCGCTTCATCTCTCAGCAAACTGGGAATCTTTACATCTCCAAAGTTCAGCCCTCGGATGTTGGCAGCTACATCTGTCTGGTGAAGAACACGGTGACGAATGCCAGGGTCCTGAGTCCGCCCACACCGTTGACACTAAAAACTGATGGTATAATGGGAGAGTACGAACCAAAGATTGAGGTGCATTTTCCTCTATTGGTAACGGCTGCCAAAGGAGTAACTGTGAAACTGGAGTGCTTTGCATTGGGAAATCCAGTCCCCACAATAACATGGAGAAAACTGCACGGGAACATCCCCAAAAAGGCCCGGCTCCGCAAATCCCAGGCGGTTCTGGAAATCCCCAACATTCAGGTGGAGGATTCTGGGACATATGAGTGCAAAGCAGAAAACTCCCGAGGAGGGAACGCTTTCCGGGGGCAACTCCAAGTGTACACGTACCCACAGTGGGTTCGGATGATTAATGACACCCAGCTGGACAGCGGAGAACATCTCCAATGGGAGTGCAAGGCCACCGGGAAGCCAAGACCCACATACCGCTGGCTGCACAACGGCGCTTCACTGTCCACACAGAGTAGAATGGAGATGGTTAATGGAGAATTGTCAATCCGGAGTGTTCATCAGTCGGACGCGGGGATGTACCAGTGCATCGCGGAGAATAAATACGGAGCTGTTTATTCCAGCGCAGAGTTGAAGATTTtagCTGCAGCTCCTAGCTTCCAGCCAAGCCCTGGGAAGCAGACAGTTATTGCCACTGTAGGTAAAGAGCTCTTGCTGGAGTGTAAACCGCGAGCGTCTCCCAAACCGAGCATCACATGGAAGAAAGGAGACCGGAAGGTTATGCCAAACAAGAGGTATGCCCAATACAATAACGATGTACCGGCATCATTATCCTCAGAAGTGTGGTATAAACTCTCTTAA

Function

symbol description
cntn5 Predicted to act upstream of or within cell adhesion. Predicted to be located in plasma membrane. Predicted to be anchored component of membrane. Predicted to be active in neuron projection. Orthologous to human CNTN5 (contactin 5).

NR:

description
PREDICTED: contactin-5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016299 True 1068 mRNA 0.51 7 15379324 15406751

Neighbor

gene id symbol gene type direction distance location
AMCG00016300 NA coding upstream 11555 15366518 ~ 15367769 (+)
AMCG00016297 dlg2 coding upstream 274306 15087879 ~ 15105018 (+)
AMCG00016296 LOC107589373,LOC106951534,LOC102797415,LOC103129241,LOC106903426,LOC107100026 coding upstream 324399 15053045 ~ 15054925 (+)
AMCG00016298 dlg2 coding upstream 337873 14987863 ~ 15041451 (+)
AMCG00016295 NA coding upstream 435241 14935995 ~ 14944083 (+)
AMCG00016301 cntn5 coding downstream 17871 15424622 ~ 15442208 (+)
AMCG00016307 NA coding downstream 123009 15529760 ~ 15547602 (+)
AMCG00016305 NA coding downstream 225637 15632388 ~ 15644947 (+)
AMCG00016306 NA coding downstream 243400 15650151 ~ 15657395 (+)
AMCG00016311 yap1,LOC107746561,LOC107687356 coding downstream 253568 15660319 ~ 15662260 (+)
G12605 NA non-coding upstream 763615 14576587 ~ 14615709 (+)
G12591 NA non-coding upstream 927570 14451510 ~ 14451754 (+)
G12589 NA non-coding upstream 930112 14448812 ~ 14449212 (+)
G12566 NA non-coding upstream 980910 14397249 ~ 14398414 (+)
G12549 NA non-coding upstream 994667 14383905 ~ 14384657 (+)
G12712 NA non-coding downstream 57326 15464077 ~ 15464312 (+)
G12763 NA non-coding downstream 334435 15741186 ~ 15743647 (+)
G12816 NA non-coding downstream 512832 15919583 ~ 15924725 (+)
G12886 NA non-coding downstream 1126353 16533104 ~ 16533381 (+)
G12896 NA non-coding downstream 1201967 16608718 ~ 16608985 (+)
AMCG00016288 NA other upstream 595789 14745316 ~ 14783535 (+)
G12587 NA other upstream 940718 14437771 ~ 14438606 (+)
G12351 NA other upstream 1742323 13635442 ~ 13637001 (+)
G12349 NA other upstream 1747527 13631285 ~ 13631797 (+)
G12348 NA other upstream 1751613 13621879 ~ 13627711 (+)
AMCG00016329 NA other downstream 1077604 16484355 ~ 16486003 (+)
G13012 NA other downstream 1710042 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 2155667 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 3012266 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 4468305 19875056 ~ 19879725 (+)

Expression


Co-expression Network