AMCG00016301 (cntn5)


Basic Information

Item Value
gene id AMCG00016301
gene name cntn5
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15424622 ~ 15442208 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016301
CAAGCTTCCACAGCGGATCTAATGATTAGGAATATCCTCCTGAAGCATGCTGGGAAGTACGGCTGCCAGGCTCAAACCAGTGCTGATACCTTGTATACAGAGGCTGAACTGCTTGTAAGAGgTCCTCCGGGGCCTCCAGGGATTGTGATAGTGGAGGAAATTACTGATACCACGGCAACGCTGTCCTGGAGTCGTGGAGTGGATAATCACAGTCCAATCAGCACCTATAATTTGCAGGCGAGGAGCCCATTTTCATTAGGATGGCAGACTGTGAAAACAGATCCAGACCCCGTGACTGGTGCCATGGAGTCTGCCATGGCGGTGCAGCTGAACCCGTGGGTAGAGTACGAATTCCGGGTGGTAGCTACCAACAGCATCGGAACAGGAGACCCCAGTGCCGCCTCTAGGGTGGTCCGGACTAAAGAAGCAGTCCCATCAGTGGCTCCAGCCAACGTGAGCGGAGGGAGCGGTCGACGGCATGAGCTGGTCATATCTTGGGAGCCAGTGTCAGAAGAGTTCCAGAACGGCGAGGGCTTTGGCTACATTGTGGCTTTCAGGGCCAACGGGACTCGAggctggaaagaaaaaatggtGACGTCTGCGGATTCCACAACATTCAAATACCGCGACGAGACCTTCCCCCCGCTGACCCCCTTCGAGGTGAAGGTGGGGGTCTACAACAACAAAGGGGACGGACCCTTCAGCAAGGTTGTCACAGTCTACTCCGCAGAAGGAGAGCCCCGGGAGGCCCCCTCTGAGGTGAAAGCAGCTGGTGTGTCTTCCTCAGAGATCCAGGTAGTGTGGAGGCCACCTAATCCAGGTCCAGGGAGGCCCTGGGGATACGAGGTGAACTTCTGGAAGGATATGGAGCAGGAAGAATctggagagaaaatgaaaactccTGGCAATGAAACATCCATCTTACTAACGGGGTTGGAAGGAAACACTTTGTATCACATCACTGTGAAGGGCTACAACAACATTGGCCAAGGGCCCGCGAGCATAGCTGTCCGAGCGAAAACCAAGAAATCGCCCCCAAGTCAAGCACCCAGTAATCTCATGTGGATTCAAGATGGAGATAATGTCTCCTTAGGATGGGAGCCAGTCAGATCACTTGACAACGAATCAGATGTTATGGGGTACAAGGTCCTACTTCGTCAGGAGGGCCGGAGCCACAGTGAAGTGATCGAGACAAACAGCCCGTCAGCTGTCCTGTCTCTAACAGAAGGGGGAACCTACATCATCGAGGTGCGAGCCGTCAGTGAAGGCGGGGAGGGCACGGCCAGCTCACAGATCAAAGTGCTCAAGTCTTCA

Function

symbol description
cntn5 Predicted to act upstream of or within cell adhesion. Predicted to be located in plasma membrane. Predicted to be anchored component of membrane. Predicted to be active in neuron projection. Orthologous to human CNTN5 (contactin 5).

NR:

description
PREDICTED: contactin-5 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016301 True 1314 mRNA 0.54 9 15424622 15442208

Neighbor

gene id symbol gene type direction distance location
AMCG00016299 cntn5 coding upstream 17871 15379324 ~ 15406751 (+)
AMCG00016300 NA coding upstream 56853 15366518 ~ 15367769 (+)
AMCG00016297 dlg2 coding upstream 319604 15087879 ~ 15105018 (+)
AMCG00016296 LOC107589373,LOC106951534,LOC102797415,LOC103129241,LOC106903426,LOC107100026 coding upstream 369697 15053045 ~ 15054925 (+)
AMCG00016298 dlg2 coding upstream 383171 14987863 ~ 15041451 (+)
AMCG00016307 NA coding downstream 87552 15529760 ~ 15547602 (+)
AMCG00016305 NA coding downstream 190180 15632388 ~ 15644947 (+)
AMCG00016306 NA coding downstream 207943 15650151 ~ 15657395 (+)
AMCG00016311 yap1,LOC107746561,LOC107687356 coding downstream 218111 15660319 ~ 15662260 (+)
AMCG00016312 yap1,LOC107662128,LOC107758259,LOC107746561,LOC107687356 coding downstream 241226 15683434 ~ 15697259 (+)
G12605 NA non-coding upstream 808913 14576587 ~ 14615709 (+)
G12591 NA non-coding upstream 972868 14451510 ~ 14451754 (+)
G12589 NA non-coding upstream 975410 14448812 ~ 14449212 (+)
G12566 NA non-coding upstream 1026208 14397249 ~ 14398414 (+)
G12549 NA non-coding upstream 1039965 14383905 ~ 14384657 (+)
G12712 NA non-coding downstream 21869 15464077 ~ 15464312 (+)
G12763 NA non-coding downstream 298978 15741186 ~ 15743647 (+)
G12816 NA non-coding downstream 477375 15919583 ~ 15924725 (+)
G12886 NA non-coding downstream 1090896 16533104 ~ 16533381 (+)
G12896 NA non-coding downstream 1166510 16608718 ~ 16608985 (+)
AMCG00016288 NA other upstream 641087 14745316 ~ 14783535 (+)
G12587 NA other upstream 986016 14437771 ~ 14438606 (+)
G12351 NA other upstream 1787621 13635442 ~ 13637001 (+)
G12349 NA other upstream 1792825 13631285 ~ 13631797 (+)
G12348 NA other upstream 1796911 13621879 ~ 13627711 (+)
AMCG00016329 NA other downstream 1042147 16484355 ~ 16486003 (+)
G13012 NA other downstream 1674585 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 2120210 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 2976809 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 4432848 19875056 ~ 19879725 (+)

Expression


Co-expression Network