AMCG00016313 (LOC107731450,LOC107703529)


Basic Information

Item Value
gene id AMCG00016313
gene name LOC107731450,LOC107703529
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15716894 ~ 15725845 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016313
ttttttttttttttttttttttttaaagtaacctTTAACAATTTAAGTTTGAATATCATTCCCACCATGGAAACCTAAACACCTTAATAAGGGATGTCCAATTCTGGGAGAGAGTTTTGAATCCATAAACCCAGGAGaagttttatgtttaatttgtagCAGTTCATTCAGATGAgcactgcacattttaaaactgaacttTACTTTGACTTTGCATGcccaaagatgcaaacaaaagcaaaaaataacaatcttgggtcattatatattatatccaAAAATAAGGAAGCTGGTGTTCATAACACAGAGAACGAACCAGGTTGAAAATAGAATGACATCTTTATTTGTGTTAGCTTATTTCATGTCTGCAAattatgtattgtgtttgtaGCACATTTTTAGTTTCGTTTTGTCCAACACAAAGCAGAACAAGCATGAAAAATCATGAACGGATTTTGAAACCTAGTCATGCAGTGTTTCATGACTTTAGAAGGTAAAGAATTTCCATCACAACCTTTTCAGAATGTCTTCTGCGTTGGTATTCTATTGTCTTTGCCTGCATTGTCATAAAGGCACACATTTTATGTGAGGCTGTTACACCTCATATTTTGTTGATCACGTACATAGATACTAAGGAGTAAAATGGGCTTGCCACATTGCATTGCTAAGATGTTTGAAGAGCTTTCATTTGTGCCAATGTGATAAGATCAAGCTAAATGAGTCAGAAGGGACGAATGCTGTTTGGCATTGTTTCTACATACCTAGCAATAAAGATGATTGACCTGCCATGGATTCATGTTTTCAGAGAACAATTAAAACCatctttaaaattaactttCCTTATGAAGTACTACTAGTCCTTGGGTTTACTACTGGTTCAAAACTCTCTCCCTGAAGTGGACAtcccttatttattttagttaaaaacaaaatggaaatattaaagAACAGTTCCTTCTTCATGAACCTATGGCATAACAATCCTCCGGTGGATTTGCACTACGATAATTCCTCCGAGCTCTTTCGCATTTCGACGTTCGCTAAATTCCCGCCCAATGCAGTGGTCTCTGAGAGGAGTCTGGCCCGAGCTGGGTTCTTCTACACCGGGGTGGGCGACCGAGTGCAATGTTTTCGTTGCAACGTCACGGCGGATAACTGGCAGTCGGGAGAATGCCCTGCCGAGAGGCACAGACGTCTCTCTCCCACCTGCACCTTCATCCAGGGCATCCCCAACAGCGCCAGCCTCCTGTCGTCTTCTCACTCTGCCTTCTCACCTCTGCAGAGCTTACCGGTCCTGCAAACCTCAGCCTCTCCCCCCTCAGTGCAGGTTGAGGAGCAGGTGGGCTATTTAAGCCATAGTTTCAGCAGCATCCCCCCTACCAGCCCCCTGAGCTCCCGTGGTGTGGAGGACATGTCCCACCAGCGACCGCCCACCTGCCATAACCCCAGCATGCGGCATGAGCAGGACCGTCTGGACACGTATCTGAACTGGCCGCTAACCAACATCACACCCTCGGAGCTGGCAAAAGCGGGCTTCTACTACCTAGGCCAGGGCGATCGTGTGGCCTGCTTTACCTGTGGCGGGCAACTGAGCAACTGGGAGCCGGGGGACAGGGCTGTGTCAGAGCACCAGAGGCACTACCCCAACTGCCGATTCGTCAGAGGAGACCGGACGGAAAACGTGCCCCTCCCTTCCAGTGGACCCCTGAGTGTCTCTAACCCGCTCATGCAGTTGTGTGAGGAGAGGCTGCTTACCTTTGTCAACTGGCCATCCAGGATACCTGTGCGTCCGGATCAGCTGGCCAAGGCTGGCTTTTACTATGTTGGTCGAAATGATGACGTCAAATGCTTCTGTTGTGATGGTGGCCTGAGGTGTTGGGAGTCGGGCGATGACCCATGGGTTGAGCACGCCAAGTGGTTTCCAAGGTGTGAGTACCTTCTGCAGGAAAAGGGACAAGATTTCGTTCATCAGATACAGGCCAGGTTTCCTCGACTGTTTGAGCAGCTGTTGTCCAATGGTGATAACAGCTCTCGGGAATTTATTGATCCACCAGTGGTACAGCTGGGCTTTGGAGAGGAGCGCTCTGAGGATGCTGTAATGATGAACACGCCTGTGGTAAAGTCAGCCCTGGAGATGGGCTTTGACCGCAATCTTGTGAAACAAACAGTCCAGAGCAAAATCCTCACCAGTGGCGAAAACTACAAAACAGTCCAAGAGCTTGTCTCTGATCTGCTCAATGCTGAGGATGAGAAACgagaagaggagaaagagaggctGGCAGAGGAAATGGCTTCAGatggCTTTACATTTTTGAAGAAACACCGTGTTGCCCTGACCCAGCGCCTGAAAAGTGTGCAGAGTCTGATGGATCACTTGCTGGAGCAGTCGGTAATTCACCAGAACGAGTATGATGCCATCCATAGCTGCACCTCTGTCAAACAGCAGACCAGCCAGCTCATTGAACTTGTGCTCACGAAAGGGAATGCAGCAGCAGAGGTCTTCAGAAACTGGATCCAAAAGAATGACATTTACCTTTTAAGGGAATTAATGGGTAATTTGATTTATCTTAACTTTTGACTCAACCTGAAAGTGAAGCTTatgctgatttttatttttttggtaatttTCCCCTGTACAGCAAAAAAGCAGTGATGAAGGAGGGGTATAACAGTGTTGACATGGCTGCTTTTCATACATGGCAGTTCTGCAAGCATATTCAAGCCCAAACTATGGATATCTACTGGTAGTCCTTAAATTATGCCGtttcaaacaatgtgtttttgccATATACTTTACTGCCCCTCATCCCAATAACATGCACCATTTCACACTACTGCAGCTAGTACATctttcttcagtttgttttggcCTTTGAGCTCCAGTCAGTGAATCAATCAGGGCTGAACCACTGTATGAAACAAACCAACAGATTCATAACTACCACGTTGTTTGAGGATGACCTGTATGGTAAACTGCATTTTAACTCTTGGGAGTTCCAACTTCAGGAAAACCCAAAATGATCAGAAAAATGTAAGAACACAACATGTTGCACTGTCTCAAATGCTGcacaaataatttgattaattcttTAAAGGCAAAtatttttgcaattacagcCCAAACAAATGAGCCTTCTTCACCCAGTCAAGAACTTTCTGACTTGCCTATGGAGGAACAGCTGAGGAGACTGCAGGAGGAGCGCACGTGTAAAGTATGCATGGACAAGGAAGTTAACATTGTCTTTATTCCTTGTGGGCACTTGGTTGTGTGTAAAGAATGTGCCCCTTCATTGCGCAAATGCCCTATTTGCAGAGGCCTGGTAAAGGGGACTGTTCgtacttttctttcttaattcGGAATGAAGCTTTAAGACTTGATTACACATGTGAAATGGTATAGCATGGCTTTCTAACGTGTACCCATTACATATCCGCTAATAAGTGATTAAATCCACTTGTAGGATTAACAAAATCAGCTATTCCAAACCCTGACAGTTTGTGGTGTCCTCAGTTTCATTATAGACTAGACCTGCTCCAGAAGAATTATTTCTGCATGTGCTAAAATGCCAGCAGAATAGGTTGCATAACCTTCTCGCATCTATGtggataaaaatgaaaactactgaacAGTAAAGTAGAGCACTGTAATTCATTATCTGCACAAGTTGAAACAATAAAGGAATAACATTATAAAACTCTCCTTGTATCATTTCACACAGCAGGTCAATTTCAAGTTAATATTGCATTCAAACATGGGATAGCTAGGTACTATGTATTCTAATAGGGGAATTCCACTGCTGTGTTTACCTACTAGCCAATGTCTGTGGGGGGAAAAGGGTATCCAGAGAAGTCTATGTAAACTCAGTGTTTAGTAAGTCAGCAATCTTAGAAAGGAAATTACCTGATTTTcatgaagagaaaagtatttgatcaat

Function

NR:

description
PREDICTED: baculoviral IAP repeat-containing protein 2-like isoform X1

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K16060 BIRC2_3; baculoviral IAP repeat-containing protein 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016313 True 3935 mRNA 0.44 7 15716894 15725845

Neighbor

gene id symbol gene type direction distance location
AMCG00016312 yap1,LOC107662128,LOC107758259,LOC107746561,LOC107687356 coding upstream 19635 15683434 ~ 15697259 (+)
AMCG00016311 yap1,LOC107746561,LOC107687356 coding upstream 54634 15660319 ~ 15662260 (+)
AMCG00016306 NA coding upstream 59499 15650151 ~ 15657395 (+)
AMCG00016305 NA coding upstream 71947 15632388 ~ 15644947 (+)
AMCG00016307 NA coding upstream 169292 15529760 ~ 15547602 (+)
AMCG00016314 NA coding downstream 99152 15824997 ~ 15836961 (+)
AMCG00016324 NA coding downstream 668126 16393971 ~ 16403344 (+)
AMCG00016322 NA coding downstream 704245 16430090 ~ 16435049 (+)
AMCG00016323 pcf11 coding downstream 720783 16446628 ~ 16461315 (+)
AMCG00016330 NA coding downstream 739606 16465451 ~ 16483942 (+)
G12712 NA non-coding upstream 252582 15464077 ~ 15464312 (+)
G12605 NA non-coding upstream 1101185 14576587 ~ 14615709 (+)
G12591 NA non-coding upstream 1265140 14451510 ~ 14451754 (+)
G12589 NA non-coding upstream 1267682 14448812 ~ 14449212 (+)
G12566 NA non-coding upstream 1318480 14397249 ~ 14398414 (+)
G12763 NA non-coding downstream 15341 15741186 ~ 15743647 (+)
G12816 NA non-coding downstream 193738 15919583 ~ 15924725 (+)
G12886 NA non-coding downstream 807259 16533104 ~ 16533381 (+)
G12896 NA non-coding downstream 882873 16608718 ~ 16608985 (+)
G12901 NA non-coding downstream 897838 16623683 ~ 16623967 (+)
AMCG00016288 NA other upstream 933359 14745316 ~ 14783535 (+)
G12587 NA other upstream 1278288 14437771 ~ 14438606 (+)
G12351 NA other upstream 2079893 13635442 ~ 13637001 (+)
G12349 NA other upstream 2085097 13631285 ~ 13631797 (+)
G12348 NA other upstream 2089183 13621879 ~ 13627711 (+)
AMCG00016329 NA other downstream 758510 16484355 ~ 16486003 (+)
G13012 NA other downstream 1390948 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 1836573 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 2693172 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 4149211 19875056 ~ 19879725 (+)

Expression


Co-expression Network