AMCG00016322


Basic Information

Item Value
gene id AMCG00016322
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16430090 ~ 16435049 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016322
GTATGTGAAAGACTTGATTGGCTGTTTGCATTTTTCGGAAAATTTGAAAGAGATAGTAGCCAGACTTgtttttcaagtttgttttgttttacacgGTAGTTTTGTAAATCTGTACATATGTTTCAGTCTTTATAGATCCTAAACTATTTGGTTTAGCCGACGTATTTATCCAAAGTAGCTCATTAGAATGCACAGCTGCATTATACATGTTTATACAGAGCtgtgttaaatataattaatatatgactGATACATACTTTAAGGATTGTATATTGTACAGCATAATgcgaaaaacaaaaagcagcacaaGTTGCAAGAAATCCACCAAGTGAGGTGAAGGTTGGTGATACTTTTGTTGTGACCAAATGTCTAATGGGAGAACACTGATCAATGCTTCAGTTTTGTCTCTCCAAGATACCTGTATTCTCTATCCCTGCTGTAAGAACTGCGTGTCCAGGTTGTTCATGAGAGATTCTAGatacAGTTGTAAAAAGTGTGGTTTCACCTGTGAAGTTCATAATATTAGTTACAGATATAGGCTGTCCTTCAGTGTGGCCAAAGACAGTGACATATTAAGATTATCAGTTTTTGGGAGCTGTTTGGATCCTTACTTTGGTGtttctgctggatttcttcaAAGATTTGTGGAGGAAGTAAAGCAAGAAGTGGGTGATCATGTGCAAAAGATTTTAATCCAGGCCGTAGAAGATTGCTTTGTTGGAAGAAGTTTCATATTTGGACTGAGGTTGTCCAGAAACCAAATGAGAGAATACCCCTGGTTTGCTGAAAGAAAGATTCAGACCTCACTCAACAGCAACCGATACACAGGACAGTTTGTTGCCTGCCAGATTGCTTTGCCGAATACTGCTGTTGTACACTGCACTGTGATCAGCTACTTTAAGAAACTGTTACAGGCAGTTCCTGCTGCAAGCCTTCACAGCATTTCAGAGCAACTTGGAAGCTTTCCAGATGTAGCAGAGCAAGATAGTTCTACAGGGTTGACCTGCTTTCACAGCTCATTGGCACACAGTGGACAATCATTCACACAAGAGAGTAAAGAAGATCAATGTATACGGCCTTGGGAACACTCACCTGGAATAATCACTTCATCCGCAGAAGAATATTATAGCTTTCAACAGAACCAAGAAACAACCATTTATTCACAATGGGAAAAGAAGTCTCCAAGGTCTCAGAAAAATCATTGCATTTTGAACTCTTCCTATCGTGCATCCCTTCAGTCTCTGCCTTCCAATTACAACACAATGAACAAGGGTGAAAAGAGGAAGCGCAATGATTCAAGCAAAAGGGAAAATAGTGAGAacccttttgaaaatgttgttcaGAGTAGCTTCTCTTCTATGTCGGACATATCCAGATTGTCGCTGGTGAAACTGCCATTGCACTACCTGAACAAAAGTAGGTCAAGCATGCAGGGAGACAATGATCAAAGTGCAGATTATTGGGGACATGTGTTTTCTGGAAGGAATGATGAGATCTCTTTTTCTCAAGGGGAAGCATGTTTTGCTAAAAAGACCGAGACCTATAATTCCTTAGCGTGGGAAGAACTCCCATTCTCGGAAAGCCTAAGTGAATTTATTAGGAAAGTAGAAAACAATACTGAATGGTCCACTGATGACAATATATGTAATACTGTGCAAGAGGATACAAACAACAGCCCAGGATTTGGCACGTCCAAGTTTACAAATTTGCCTCATGTTCATGACAGCAGCACCCCAGAATCATCCAATaacttaaacaaatattttaaagaatctGGTCTGCATGGAACAGCTATCACAATGGGAGTTAATCTGGATTGTTCATCAGGATCTTTTGGAAAAGGTGCTGAGATGCTCAATAAAGACGATGGTAGTTTATATGCAAATGCATTGAAtggaacagaaaatgaaacactAAACCAATTTCATTCTCCTGGAGGAGAATCTGATTCTGTGCTTAATGTACAGGTTTCCAGTGCATCTGGAGTCCAAAAGAAAGAGACTGgtgtacagttttgtaaaaCAGGCTGCAGAATGCCAAAATCTGTCATTGTGTGGGAGTCTCATGAGCAGAAACAGTGGGAAGAATGCTCAGATGCTGCAAATTCTGATGCTTTTTCAAGGAATAATTATACCAAATGTGCTGAGGATGAATCCACAGAATTAAACAGCCTGCATGATGTAGTTAATGGGCAAATCAAATTGTATTGCAAGAAAGATTGTACAGCTGACCATGAGCAGTGTGATTCAGGCCATGTAAGCAAAGAGCATCCGCTGCAAAACAACTGTAGTGGTGCAGAAGATGTATACAATGCTTCTGCTGATCTGTTTAACAGCAGTCGTCATGGCAGCAATGTTGTAGAGGGTGGAAACATATCATTGCCATTGCAATCACCTCTTTGTGTTCAAGAGCATGATCAATCAAGGGGTTACCCTGTTCCCCAGCAACTGCTGGCTCTTTCTCTTCCGGTTATAAAGGGAACCCCTGTAAGGTGCtctcacaaaatacacaatcgTGGACTTGATGACTCAGATTCAGAATTTTCAGATTCTCAGGATTTTATACCCAATTCCCAGTCAACACCCGTTTCAAAACACTGTATCCCTTTGCAGACATTTCCAGTTGGAGTTAATAACAGGAAAGGGAGATTAAATCTTTGTGCATCTAGAAGTAACTTATTGACCCTGCACAAGCAGCATCAACAACATACTGTTCAAAGGAATTgtgtaaaacaatgtaaaagtaACAACGGTGTTTCAAGTAAATTTGAAAGTGACTTTGAGGAAGTGATCCCATCCTCTGTAACCAAAAATGCTTGTATATCAAAACTACAGAGACTGACCAAAAGATCTAGAAACATTCGGTACAATTATTGCAAAATTAAAGGGAAAGGAGAAGCAGATCAATTCACGAAAAGGCAATCTGTTCTTTTTGCACCAAAGCCAAAAGATTATTACATGGACTTAAGTAAACGAAAGGCTTCAGCCACAGTGGAAGGATTCAAGAAAAGCAATGATTCTGAGATCAAAGAGAGGATTTCTTTTAGTATCTCTAGCCCCTCCACACCATCTGCTAAGGCCAATAATATAACTGTTAACTGCTCAGTGGATCTCTTTGCTGATTCCTTACATAATTCTTTGAGTTAAGGCCCAGACCAGCAAAGTTGAATGTAACTGTAACCTATTTATTTGTTAGCATAAATGCATTTCCTTGTGCTGCTTCAAAATATACCTCATATGATGGAATGTCACtattacatttgaacattttgaagATTGATTCAAACGTCATAATCATGCAATCTTTGCACATACTTgtcctttgtcttttttttttttaataaaaacaattatgggTAAATATAACTAGTTATCATAATTTATCTAAGTGCCTTGATGCATCTAAATGCAACTTAAAAGCTAGATggataaatgtgttaaatgttgtcAAGAAAGAGACACCTGAAACCCGCGTCTTCACATTTGccaaataaatcaaacagaaaatgaaagggaGAAGTAACGCTAGGGCTTCAATGTAGAGCAGCTTCACTGAACAAGGAGTTACTGTTTATGTATCGATGTCTTGAGCCCAGCTTGGGGAGAGACACTGTGCCAAAGCTTTAAAGTGATGACCAAGTCGAGTGGCCCTGGCTCAGGAGTGGTTCTTTTCTGCATTGTTGGAAGGAAGCCAAGACTAAAAGCAAGAATTGCCTGCTTTAAATTACAAGCTCTTATAATGCACAAGGCAACCCATGTATcgaaacaaaagtaaaacagattAAAG

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016322 True 3786 mRNA 0.39 4 16430090 16435049

Neighbor

gene id symbol gene type direction distance location
AMCG00016324 NA coding upstream 26746 16393971 ~ 16403344 (+)
AMCG00016314 NA coding upstream 593129 15824997 ~ 15836961 (+)
AMCG00016313 LOC107731450,LOC107703529 coding upstream 704245 15716894 ~ 15725845 (+)
AMCG00016312 yap1,LOC107662128,LOC107758259,LOC107746561,LOC107687356 coding upstream 732831 15683434 ~ 15697259 (+)
AMCG00016311 yap1,LOC107746561,LOC107687356 coding upstream 767830 15660319 ~ 15662260 (+)
AMCG00016323 pcf11 coding downstream 11579 16446628 ~ 16461315 (+)
AMCG00016330 NA coding downstream 30402 16465451 ~ 16483942 (+)
AMCG00016334 NA coding downstream 71248 16506297 ~ 16520198 (+)
AMCG00016337 NA coding downstream 122189 16557238 ~ 16563218 (+)
AMCG00016346 NA coding downstream 301055 16736104 ~ 16740028 (+)
G12816 NA non-coding upstream 505365 15919583 ~ 15924725 (+)
G12763 NA non-coding upstream 686443 15741186 ~ 15743647 (+)
G12712 NA non-coding upstream 965778 15464077 ~ 15464312 (+)
G12605 NA non-coding upstream 1814381 14576587 ~ 14615709 (+)
G12591 NA non-coding upstream 1978336 14451510 ~ 14451754 (+)
G12886 NA non-coding downstream 98055 16533104 ~ 16533381 (+)
G12896 NA non-coding downstream 173669 16608718 ~ 16608985 (+)
G12901 NA non-coding downstream 188634 16623683 ~ 16623967 (+)
G12906 NA non-coding downstream 237083 16672132 ~ 16672496 (+)
G12907 NA non-coding downstream 239844 16674893 ~ 16675189 (+)
AMCG00016288 NA other upstream 1646555 14745316 ~ 14783535 (+)
G12587 NA other upstream 1991484 14437771 ~ 14438606 (+)
G12351 NA other upstream 2793089 13635442 ~ 13637001 (+)
G12349 NA other upstream 2798293 13631285 ~ 13631797 (+)
G12348 NA other upstream 2802379 13621879 ~ 13627711 (+)
AMCG00016329 NA other downstream 49306 16484355 ~ 16486003 (+)
G13012 NA other downstream 681744 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 1127369 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 1983968 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 3440007 19875056 ~ 19879725 (+)

Expression


Co-expression Network