AMCG00016327


Basic Information

Item Value
gene id AMCG00016327
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16470611 ~ 16475170 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016327
tgggCTGCGTGCGATtctgcagaactgcggaaatctgcgctacaagaaacGACCTGAGCAGTAGGGCATAAAACATATGTAAAAGATACAGTGGTAACAGTGGAACTTTATAAACCACAACAATACTATTTATAATTGCAACGtatctgtttaattttaaatataaagagaGGTAGTCGCTACTCAAAACCATGCATTGCAGATACTGTAAGACTTTAGTTAATTCTGTTTGTAAAAACCGATTCCAATTACAACATCCAATCCAAGCCGCATATTATTACCAGCGCCGTGTGCAGAATGGGAAAGGAAATAGCTCTTCAGCAAATAATGTCTCACCTGGATTCAATAAGGAAGGACATGGTGATTTTGGAGAAAAGCGAGTTTTCAAACCTGCGGGCTGAGAATGAGaaaatgaaaactgagcTGCAACAGGTTAAACAACAACTAATCACTTACATTCCCCCCCCCCTGCATTCTCAGTTTACAGAACAGGAGAAGAAGCTTTTGGAAGTCAGTACAGAATTTCACAAAAAGAATACCGATGTAGAGCGGAGCACATTggaagcaacaaaaaaaattgacacAGAAGTGGCTTCGCTTAAAACTCTCCTAGAATCTCTCAAGCTTGACACCATACGGTACCTTGCAGCATCTGTTTTCTCCTGCCTGGCGATAGCATTGGGATTTTACCGTCTCTGGAAGTAACGATTCTGGCAAGAAATTAAAGCATTATATAGCTCAGTTGGTTTCAAAAGTATGGACGATCTATGATTCAGAAAGTGCATCTGTCTACGGAGTTTTGCTTAAGGAAGCATTTACTGCAGCTcatgtattgtgtttattgagCATTTGCAGATATAACAAGTTTTTGACAGTGCTGTGAGAAgcaatgttaatgttaaaataaatatttacacttatttcagaaacaaaaaggaCACTTATGATGACCATTATTTAGACAGAATGGCTCTGTGAGCATTTTCTACACACCACTGCAATGCACATTGATTCAAGTCAATTTTAACATGGGATACCGAGATAAGACTGTTATAGTATTCTCTGTTGGAAATGTTGCTGTAATGTTGTGATTGAACATTGATCCAagattgtgtattttctttttttaaacatgaaaaaccTGTGTATTAATGTTGATTTAATACAATTCCATATTGCTGCCAATAAAGATGatataaaatgatacatttggcCAAGTGTTTACTTCTCTGAGATTCTTCTCACAAACACACCCCCAACATCATTCTTTCTAgttttctttgatttctttttctccttGATCTGTTCTTGAGGTTTTGCTTCCTCTGCTGCTTGTAGATTCTGCAGGCACTTATTGAGG
>TU15930
ATCAAGTatgatttgaaaatacattcagGAATGAAATACACTCAAATATAAGACCCAAGTACAATGTGTCTTGTAAGTGCCAGGTTTAATCCAATGAATAATGAGCCTGCATTTGTTAGTTATCACAGCTATGTATGTGCTTAAGAGCTTTCCCTAGATTTCAGAGAATCACAATATGGAAGCAGCTCTGTACCATCCACAGGGAATTGAACACAATTAAACTCACGGCTGCTGCTTGTAGATTCTGCAGGCACTTATTGAGGTGCCCAATCTCTGCCCTGTAGTCATCCAGCTGGCATTCCAGCTTCTCTCTGCGCACTCTCTCATACTCGAGCTGGGCCTGAAGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016327 True 1360 mRNA 0.38 7 16470697 16475170
TU15930 False 349 lncRNA 0.43 1 16470611 16470959

Neighbor

gene id symbol gene type direction distance location
AMCG00016325 rab30,LOC107670675 coding downstream 25123 16435492 ~ 16445488 (-)
AMCG00016326 NA coding downstream 44966 16419874 ~ 16425645 (-)
AMCG00016328 NA coding downstream 61333 16408355 ~ 16409278 (-)
AMCG00016318 tenm4,LOC107740368 coding downstream 408893 16057109 ~ 16061718 (-)
AMCG00016320 tenm4 coding downstream 440143 15921097 ~ 16030468 (-)
AMCG00016332 NA coding upstream 11291 16486461 ~ 16486880 (-)
AMCG00016331 NA coding upstream 29046 16504216 ~ 16508407 (-)
AMCG00016333 NA coding upstream 101439 16576609 ~ 16586666 (-)
AMCG00016335 NA coding upstream 112321 16587491 ~ 16752990 (-)
AMCG00016336 LOC107680719 coding upstream 282245 16757415 ~ 16774872 (-)
G12868 NA non-coding downstream 2339 16467973 ~ 16468272 (-)
G12867 NA non-coding downstream 2792 16467617 ~ 16467819 (-)
G12838 NA non-coding downstream 246883 16223485 ~ 16223728 (-)
G12814 NA non-coding downstream 629819 15837835 ~ 15840792 (-)
G12812 NA non-coding downstream 634143 15835194 ~ 15836468 (-)
G12894 NA non-coding upstream 120508 16595678 ~ 16596220 (-)
G12897 NA non-coding upstream 133548 16608718 ~ 16608944 (-)
G12902 NA non-coding upstream 148513 16623683 ~ 16623906 (-)
G12915 NA non-coding upstream 274549 16749719 ~ 16749919 (-)
G12921 NA non-coding upstream 316253 16791423 ~ 16791669 (-)
AMCG00016293 NA other downstream 1678642 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 2043321 14420356 ~ 14427290 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 2911427 13543348 ~ 13559184 (-)
AMCG00016226 NA other downstream 3600051 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 4141578 12323161 ~ 12329033 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 383371 16858541 ~ 16861179 (-)
AMCG00016345 NA other upstream 391148 16866318 ~ 16870002 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 788431 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 1062864 17538034 ~ 17541342 (-)
G13367 NA other upstream 2616069 19091239 ~ 19105381 (-)

Expression


Co-expression Network