AMCG00016328


Basic Information

Item Value
gene id AMCG00016328
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16408355 ~ 16409278 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016328
ATGGAATACGAAATGGACAAAAGTTTTGAGGGGGGCCTCCTGGGTGAAATGGAGTGTGAGGGGGACTTCAAGGAGACCACCAGAGACCTCCTGAGCTTCATCGACTCGGCCTCCAGCAACATCAAGTTGGCTCTTGACAAACCGGTGAAGTCCAAAAGAAAAGTGAACCACAGAAAATACTTACAGAAGCAGATTAAGAGGTGCACTGGCATCATAACACCTGGCAACGCCGGGCAGGAAGCTGTCAAGAGGCAAGGCTCACCCCCATCCAACCCCAACAGCAGCTTCCAGTGTAAGCCCCCGCCGAAGCGAGAGGGGATCCAGTCCAACCTGCAAAGCAAGAGCCTGGCAGCCCTCTTTGACTCAGCGAAGGAGATCAGGGGGGAGAAAGGGAAGAAACTGCCTCTGCGACACCGCAACCTCCCCCCCTCTTTCTTCACAGAGCCTGCCAACACCTCCAAAGTGACCTCCACCTCTGGTATGACTCTAAAGGACCTGGAACGGGGCAACCCTGAAGCAGCTGAGTTTTTCGAACTCCTGGGTCCAGACTACAGCAACATGATCACTGATCAAGATATCATCCAAGGCATGCCTGTGAGGATCCAGCAAGAGGTGGCTTTGGAGCCTGGGTCGTATGATCCTCATCAGCTGGTGGGGGGTTTCCTATACACAGAGCCCTGGACTACTTGTAGCAGTTTTGGTAAAAAAACTGGGATCTGCAGCTTGAATTTAAACGAGAATGTGAGGACAATCCCCATCCAGCCCCCTGTGTACTGTCATTCGGACTCCACTGTAGCATCGCCCCTGGAGGAAAATGCTCCAAGCGTGTCGGTGTTCCCACATTTCTTCACAGAGTGCTCTCTTCCACAGGTCACTTACGATTACAGCAGTGGATACAACAGAACCAATTTCTCTTCACTTTGA

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0007420 brain development biological_process
GO:0060322 head development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016328 True 924 mRNA 0.52 1 16408355 16409278

Neighbor

gene id symbol gene type direction distance location
AMCG00016318 tenm4,LOC107740368 coding downstream 346637 16057109 ~ 16061718 (-)
AMCG00016320 tenm4 coding downstream 377887 15921097 ~ 16030468 (-)
AMCG00016321 NA coding downstream 505535 15890260 ~ 15902820 (-)
AMCG00016319 NA coding downstream 559243 15841259 ~ 15849112 (-)
AMCG00016315 NA coding downstream 584089 15804860 ~ 15824266 (-)
AMCG00016326 NA coding upstream 10596 16419874 ~ 16425645 (-)
AMCG00016325 rab30,LOC107670675 coding upstream 26214 16435492 ~ 16445488 (-)
AMCG00016332 NA coding upstream 77183 16486461 ~ 16486880 (-)
AMCG00016331 NA coding upstream 94938 16504216 ~ 16508407 (-)
AMCG00016333 NA coding upstream 167331 16576609 ~ 16586666 (-)
G12838 NA non-coding downstream 184627 16223485 ~ 16223728 (-)
G12814 NA non-coding downstream 567563 15837835 ~ 15840792 (-)
G12812 NA non-coding downstream 571887 15835194 ~ 15836468 (-)
G12811 NA non-coding downstream 573273 15834822 ~ 15835082 (-)
G12810 NA non-coding downstream 578788 15829355 ~ 15829567 (-)
G12867 NA non-coding upstream 58339 16467617 ~ 16467819 (-)
G12868 NA non-coding upstream 58695 16467973 ~ 16468272 (-)
G12894 NA non-coding upstream 186400 16595678 ~ 16596220 (-)
G12897 NA non-coding upstream 199440 16608718 ~ 16608944 (-)
G12902 NA non-coding upstream 214405 16623683 ~ 16623906 (-)
AMCG00016293 NA other downstream 1616386 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 1981065 14420356 ~ 14427290 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 2849171 13543348 ~ 13559184 (-)
AMCG00016226 NA other downstream 3537795 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 4079322 12323161 ~ 12329033 (-)
AMCG00016327 NA other upstream 61333 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 449263 16858541 ~ 16861179 (-)
AMCG00016345 NA other upstream 457040 16866318 ~ 16870002 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 854323 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 1128756 17538034 ~ 17541342 (-)

Expression


Co-expression Network