AMCG00016330


Basic Information

Item Value
gene id AMCG00016330
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16465451 ~ 16483942 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016330
ATGCCCACCGCATCGATGCCATTAGTCCGCAAGAAGAAAGCCCTGGCCACCGTACACGAAGCGGTGAGGGCAGCCGACGTGGAAGAGCTGGCCATGATGGTGAAGAAAGGAGCCAGTTTAAATGAAGTTGACCCAGAGCACAAATTCACCCCTCTGCACTGGGCTGCACATGCTGGGAGCCTGGAGTGCCTGCACTGGCTCCTGTGGCATGGCGCTGATACTACATACACAACTCCCCAAGGCTGGACACCTGCCCATTTAGCTGCTATAAGGGGCCAGGATTCGTGTATGCAGGCTCTGGTTATGAATGGTGCCAACCTGACCGCCCAAGACAACAGGGGTTGCACTCCAGCACACCTGGCAGCCGCTCATGGACACTCGTACACACTGCAGACAGTCCTGCGCATTGGAGTGGACTCCAACAGTGCTGATAAGAATGACTGGAGGCCGGCACACTATGCTGCCTTCCATGGGAGACTTGGCTGTTTACAGTTTCTTCTTAAGTGGGGAGCCAATGTGGATGATGTTGATAAAAATGGGAATACGCCAGctcATTTAGCAGCAGCCGAAGGACatctgcattgttttaaattcctGGTTTctcagggagtgagtgtagccCACACACTGGGAGCCAGGAACGACCAGGGAGAATTGCCCAGAGATCTGGCCCAGAGGTTTTACAAGCAGCCGATTGTACAATACATCGAAGCTGTGGAAAACCAGAGTGACTTCCGTGATGAGCAAGAAAACCTGGCATTCCCAGCACATGTGGCTGCACTCAAAGGGGACCTGGACATGCTGCGGAAACTGGTTGAATGTGGCATCATAAACATCAATGAGCGAGATGACAAGGGTGCCACTCCTATCCATAAAGCGGCTGGACAGGGCCATCTGAACTGCTTACAGTGGCTTCTGGACATGGGTGCTGATCAAAACATCACAAACGATGCTGGGGAGACACCAAAGGATATTGCAAAGAGGTTTGCTCAGCTGGCTGCAGTGAAGCTTCTCGGAGGAGGGGGTCCGGAGGAAGACTCTGACGAGGAACTGGATTGCACAGAGCCATCTTTTTTCGAAAGACATGGTGTGGAAGGAAGCACAGACAGCTTTGAAGATGTCAATCTAAGTGTCACTCAGAAAAAGGAGGGTAGAATGCGAGCGTACAAAAAGATTGAGGAAATTGAACGTCTGCTAGAGATTGCAAAAAGTAACTACAGGCAGCTGGGAGGGATCCTCGAGGAAGAccgaaaggaaaggaaagaacaAAGAGAAGCCGCAAGAACCATCAAAGAGCTTCAGGCCCAGCTCGAGTATGAGAGAGTGCGCAGAGAGAAGCTGGAATGCCAGCTGGATGACTACAGGGCAGAGATTGGGCACCTCAATAAGTGCCTGCAGAATCTACAAGCAGCAGCCGAAGCAAAACCTCAAGAACAGATCaaggagaaaaagaaatcaaagaaaacTAGAAAGAATGATGTTGGGGGTGTGTTTagtaCCTCATTCTCAGCCCGCAGGTTTGAAAACTCGCTTTTCTCCAAAATCACCATGTCCTTCCTTATTGAATCCAGcCATTCTACGGATTTTGAGGTACACAGAAACTGGCTTGCAATTACACACAGTTTAGCAGTCTCCAAATGGTACTATGAAgaCACCTCTGAATGGACTTTAGATTATCCTCCATTGTTTGCTTGGTTTGAATATGGCCTGTCCCACATTGCGAAGTATTTTGACAAAGAAATGCTGGTTGTGACCAATTTGAATTATGCCAGTCCTGCCACTGTCATCTTTCAGCGGCTCTCGGTCATCTTTACTGACCTTCTCTTCATTTATGCCGTTAAAGAgtgtttaaaatgtgtgagaagaaataaagaacCCAAGGATCTCCTGGAGAAGCCAGTGTTTGTGttggctgtgctgctgctgtgcaaCTTTGGGCTCCTCATCATTGATCACATCCATTTCCAATACAATGGCTTCTTGTTTGGCCTGCTGCTTCTCTCAGTTGCCAGGCACTTCCAGAACAGACACCTTGAAGGAGCTCTACTGTTTGCGTTGCTGCtgaattttaaacatatttacctGTACATAGCTCCTGCATATGGAATCTACCTCCTGCGTTCTTTCTGCTTCACCCAGAACAATCCAGatgGATCAATAAAGTGGAGGAGTTTAAGTTTCACTCGTTTTGTGGTTTTGGGAACAATTGTGTGCTCCGTCTTTGCTCTGTCCTTTGGGCCATTCATTGCTATGGGTCACCTTCCTCAGGTGCTGTCCAGACTCTTTCCCTTCAAGAGAGGACTGTGCCATGCCTACTGGGCACCCAACTTCTGGGCATTGTATAATGTGGCAGACAAAACTCTGTCCGTCTTAGGGGTGAAGCTACAATGGATTGAAATGGACAAGCTGCCCAAGGCCTCAATGACTGGGGGGTTAGTCCAGGAATTTCAGCACTCTGTCCTTCCCTCTGTGACTCCGTTAGTGACCCTGGTTTGCACCATCACTTCAGTCCTTCCTGCAGTTGTCTGTATTTGGCGTAACCCTCAGGGACCCCGAGGCTTTCTTCGGTGTGTGATTATCTGTGCTTTGGGATCTTTCATGTTTGGATGGCATGTACATGAAAAGGCTATTCTAATGGCCATCCTTCCATTGAGTATCTTGGCTGTGGAAAGCCGAAGAGATGCTGGAATATTTGTGATATTGGCAACCACAGGCCatttctccctctttcccctTCTCTTCACTGCTCCAGagctACCAATCAAAATCCTTCTCATGTtaatgtttacagtgtacagtttGACCTCACTAAATATGTTGTTCCGAAAAGAAGGCTGCCTGATTAATTGTGTGGAGGTAGCCTACCTCACTGGACTGGTCCCACTGGAGATCTTCTGTGAGCTTGTCTACCCTCTGACCCACTGGCAGCAAACCTTGCCCTTCATTCCTCTGCTGCTGACCTCTGTGTACTGTTCATTGGGAGTTACTTATTCCTTCATTAAGCTCTATGTCTCAATGTTCACAAGGCCAAAGGAGTCAGACAAGAATAAACGTCAGTGAAGAGACAAAGATGCAACTCAGGGTCCAAGCAAGCGAGTGCCCACTACATACTGTGTGGGCACGAGACTGCTTTATAATCCCAGACACAGTGGTATGAATGCTATCTGTATGtgcacacaaaatgtatatttttataaaataaaatcaggaatATTATTAATGGATGCAtgtgttcttttgttttgttgtatgaAATACATGCTTTTTTATGCAgactttttattgttgttgttttactttttacatctttttttaatccagttCAACTGTTTTTAAGTACCAGCTAACCTGTGCCATAGAAATAAAGTGAGTTCAC

Function

GO:

id name namespace
GO:0006487 protein N-linked glycosylation biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0046527 glucosyltransferase activity molecular_function

KEGG:

id description
K03849 ALG8; alpha-1,3-glucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016330 True 3376 mRNA 0.47 25 16465451 16483942

Neighbor

gene id symbol gene type direction distance location
AMCG00016323 pcf11 coding upstream 4136 16446628 ~ 16461315 (+)
AMCG00016322 NA coding upstream 30402 16430090 ~ 16435049 (+)
AMCG00016324 NA coding upstream 62107 16393971 ~ 16403344 (+)
AMCG00016314 NA coding upstream 628490 15824997 ~ 15836961 (+)
AMCG00016313 LOC107731450,LOC107703529 coding upstream 739606 15716894 ~ 15725845 (+)
AMCG00016334 NA coding downstream 22355 16506297 ~ 16520198 (+)
AMCG00016337 NA coding downstream 73296 16557238 ~ 16563218 (+)
AMCG00016346 NA coding downstream 252162 16736104 ~ 16740028 (+)
AMCG00016340 NA coding downstream 299524 16783466 ~ 16786942 (+)
AMCG00016339 NA coding downstream 310355 16794297 ~ 16807272 (+)
G12816 NA non-coding upstream 540726 15919583 ~ 15924725 (+)
G12763 NA non-coding upstream 721804 15741186 ~ 15743647 (+)
G12712 NA non-coding upstream 1001139 15464077 ~ 15464312 (+)
G12605 NA non-coding upstream 1849742 14576587 ~ 14615709 (+)
G12591 NA non-coding upstream 2013697 14451510 ~ 14451754 (+)
G12886 NA non-coding downstream 49162 16533104 ~ 16533381 (+)
G12896 NA non-coding downstream 124776 16608718 ~ 16608985 (+)
G12901 NA non-coding downstream 139741 16623683 ~ 16623967 (+)
G12906 NA non-coding downstream 188190 16672132 ~ 16672496 (+)
G12907 NA non-coding downstream 190951 16674893 ~ 16675189 (+)
AMCG00016288 NA other upstream 1681916 14745316 ~ 14783535 (+)
G12587 NA other upstream 2026845 14437771 ~ 14438606 (+)
G12351 NA other upstream 2828450 13635442 ~ 13637001 (+)
G12349 NA other upstream 2833654 13631285 ~ 13631797 (+)
G12348 NA other upstream 2837740 13621879 ~ 13627711 (+)
AMCG00016329 NA other downstream 413 16484355 ~ 16486003 (+)
G13012 NA other downstream 632851 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 1078476 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 1935075 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 3391114 19875056 ~ 19879725 (+)

Expression


Co-expression Network