AMCG00016338


Basic Information

Item Value
gene id AMCG00016338
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16822917 ~ 16849192 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016338
CGGCGGGACAGAAGAAAGAAGTGGGAACGGTTTTGTTGTTGCTCAGAAACAGATAAGGACCCTGTTTTCTGTTTGGGAAGAGAAACTGACACCTTGCTAACCATGAAATGATATCACCAGCGAACCTTACGGTGTATAACTTAAGGGAAGGGACACATGCACGCAATGAAGAATAAGAAACTAAAATCCAGCAAAGTGggaagcaaaagaaagaaagCCCCCAGTGATGTATCCCCATCCACAAGTCTCCCTCCTCTGTTGGAGGGGCAGCTGCGTTGTTTTCTCAGAGTGACGGTCAGTAGGATCCTATGGACCATCCCAAAGCCCCCTGCCGCACCACGGGTCAGAGTGAGATGGTGGGGCGAGTCGTCCGATGGGACCCATTTCCGCCCCCGGGACAGCTCTCAAATCGAGCAGAGGAGTATTAATGGTATAGCTCGACTCTCTCCATCCTATGCTATCAGTGGCTTCTTCACAGTGGTGTCTCCTACCTCTGAAAAGCTGGGAGAATTACAGGTCTCCTTGGCCTTGGAGCCCCTGTCAGAAACCTATGACAGCAGCAGCTCAGTCCCCACCACAGATGTGAGTATAGACACTGCGATGTCGGCCCTCAACTCCAGATCCAAATCTGCTTCTCATGAGAACCTGTTGGTCGTTCCTTCTCTGCCCAGGCGTCTGTCTGTCAACAGCAACAGTGGCAGAGAGTCCATAGCAAGCAGTGGTGCGAATACACCAAGGGGGAAAGATCATCTGTATTTCCAAGAAAAAAGtaagacacagaaacagactaGTATATCTAGTACGAGACCTGAAGATGCTCAGGGGAACTTGAGACGTTCTTCTCATAATTACATGGAAGGCCAGGGGCCCTGCACAGAACTCCAGGGTCAGCCAGCCTCGCCCCGCAGGTCTGACGCACACGGCCAAGCCTCCAAGGACATCCTCTCAAttctaCTAGATCGTGGGAGCAAGCTCAGGAATGCCATGGTGGTTTCTGCTCTGAAGTCGGACTTGGATTCGGAGCCAGCACTGAAGGACATTCCTCATCCAGTCTCTAAAGACAACATCAGCACTTCAGTATTAATGCCCCCTGTGCATTCATCAGGGAAGCTGCTGCAGAATCTGCTTCACCCAGAGCCTGGTCTCCTGCCTTTGCAGAACAACCCACTGCTTCCACCAGACTTCCCTGAGCAGGACAGCACTGCAGACACAGAGAACAGAGCCATTGAGCTGCTTCTGGGCAGTATAAATGGATCCCCACTGCAATACTGGGATGGAGCCGGTTCATCCCCAGAGTCTTTGTCGGGGGCCAGCAGCTTCTTGGGGGAAAGTGAACTGAACGATCCACATTATGACCAAAGTCTTCTAGAAAACCTCTTCTACAATAAGGCTCCTAAATCTGATGTCAGCTTGAGTGATTTAGCTAGCGAGGAAGATGATGGCCTGGGTGGAAAACGGAAGCGCAAGACGAGAGGCGCTACAGGACAGGATGCAGAGGAGCCGCTTACTGAGCCTGGCAGGGTCGCACTCTGGAGAAAGGGCCACATGAGCGAACGTGTGGGTCTGGAAGGAAAGAGGGATTTGGAAGCAGAGCAGCCCAGATCTGCTATGCTGAGTGTGGACCAGGTCACTGTCTTGGGCAGGGTTCACCTGGCCAGGGTGATCATCCACTCTCTGAGCATCCCTGCTGACACCACTCCCCACAAAACCCCGGGCAAAGGAAAACCTCCTCGACCCTTAACCACCAGGAAATGCACATATTTTGTTGAGTACCTCTTCCCTGTGGCGTCCTCCGGAGGAGACCCTGCTCAAGTCTCCATGGCAACTGAAGTTACTCGAGTCGCTTCCAACAAAATGACCGGAGGAGTTGTGAACTTTCAGCAGCGGTTTGTGTTCCCAGTTCAGTTCAGTGGGGCGATGATTGAACGTTGGTGGAACATGGATCTTGTGTTTAATATCTATGCAAGGAAGATTTCGCAAAAGAAACCTGTTCCAATTGGCAAAGCTAATTTCCCTCTGCGGGAACTCCTTCAGTCTGCACAGCTGACCTTGTCCACTGAGTTACAAGTGCTGGACcttgaaggagagagagatagacaggaTCTGGGCCGTTTGAAAGTGTCATTTGAACTGGCAGCAGACAACAAAGATTTCTCTTCAGCCAACGCCAGGTCAGCAGGAGTCTCTAAAGCCTCCTCTTACGCTGTTACCAGTCCCGGAAAAAAGATCATCTCCCAGCATGGCAATAATGCCGGTCGCCAACAGAGCAGTGAGTCCACAGGCAACACCTCCGTACATGGCAGGGGCAACACAGAGGTGGAGAGACTTAGAAACAGCATGGAAGAAGTGCCAGGCATGAAGGGAGTACAGCAGCCATCTCCATCACATGCACCCCCCGTCTGCACTTTAAAGGCCCAGGGCAATGCCCAGCTTGAAGAGGAGGATGGGATTCTGTTGCACGCTTTGCTTATGGTACCAGACGGAAAGGATTTTAACCCGGGACCCATGCAGCCATGCAACCTGTACTTGAACTGCAAACTGTTTGGTTCTGATGAAACCACCCGTTCACCTGTCATCTGGGGCCAGAATATGCCAACCTTCAACTTCACACAGGTGGCTCCTGTGACGTTGACCTCCAGGCTGCTGGAGAGGATGAGGAACAACATGGTGGTGATTGAGGTCTGGCAGAAAGTGACAAGCCCGGGGCAGGATCACCTCCTGGGCCTAGTCAAGCTGCCCCTGCACCAGTTCTATATGTCCTTTAAGGATGCCAAGATTTCTCAGCTCTTGCTGCAGGCACAGTACCCCGTGGTGGGGGTGGACAGCTATATGCCTGTTGTGGACGTGTTTACAGGCATCAGCAGAGGGAGTCTGCGGGTCCTTCTCGCCATGGGCTTAGCAGAGCAAATAGTAGCGCTGCAGCGACTGAGAGATGAAGAACTGTCCTCGGCTTCTGATCTCCAAAGACCGATTCACTCTCTGGATCACATTCCACATTCTCAATCCAAGGTCCACGGAAGTCCAGCGCATAAAGACTCGATTACAGAGCACGTGTTTGAGATTACAGTGGAGCGGGTGCAGGGCCTAACACCCTTGCAGTCGACTGTGTGGGGAGAGGCGGACTGCTACATACAGTACTGTTTCCCCACTCAGGCAACAGAGACCACAAGAGCATTGGACTCTGAGGCTGTTGAGAGTGGAGTCAGTCTGAAGCCGTTCCGTACTGCCACCACCCTGTGTGTCCCCGACCCTGTATTCAGCCACAGTCAGAGCCACTCCCTGCTGGTGCATGCTGGCGTCCCAGTGCAGAGGCTGCTGCTAAGTGCCTGCTCACGCCAGGGGCCTGCTGGGATCGGAGGAATCCAGTTTGAAGTGTGGTGCAGGTATTACTACCCTAATGTGAGAGACCAGGTTGTGGCCAAAGGAGTCCTGCCCTTGTCCAAGCTGTGTGCCATGGTGACCATGCAAAGACAAGAGCAGACTGGCGCCCAGGTCTTCAGCCTCCCTCTCGTCCCCAGAACAGATGGTGCCCCTGGCCACCAACCACAGCCTTCAGGTTTGCTTGATGTGTGCATACAGTACAAGCACTGGCCAATGAGAACAGACCGTGTGAAAGGAGGGGCAGTGGCATCGAGAGTTGTGTCTTTGGCAGTCCGGGTCCACAGAGCCGCAGGGCTTCAGGCTGCTGCCAGGGCTGTAGCAAAGACAGACGGTGAGTTCCAGTACTACGCGGACATCGGGGTGAACACGTACGTCACCATACAGCTCTCGTTTTTCCCAGAGCGCGAGAGGAAGATGACGCGGGTGGTGGCTCGCTCTTTCTGTCCTGAATTTGACCACCACACAGAGTTCCCCTGTAACCTAGTGATCCAGAGAGCCAGTGGGGAGACGTGCAGTGTGGCAGAGCTGCTCGAATCAGCAGAGGTGACCTTTACTCTGTGCCATCGAGACAGTAACAAGGGTATCTCAGGGTGGTTTGCTGTGAATTTGCCCAGGGATCGTGTGGCCTCCGATGGGTTGCAGGACACAGTTGGGGGGCTGGAGGTCTCGGTCTGCTTTGCTCACCACTCGGACAGGGAGAGGGTCATTAGAGCCGCCCGGGCCCTGGGCTGGGACGTGGAGGTGGACAGTGAAGGGGACGCGTTGGACAGTGAGCTGTGGCTGGAGAGAGAAGGGCCTGTGACTGTCACTGTGTCCGTCCCCAGAGTCTGGCTCCCCCTGCACTGCCTCCTGCTGGCTGGCAAGAGAGAGCTGGACCGCTCCACCTACTGTTACTTTCGCTACAAACTGTACGACGGCAAGGCCTTCTGTTCCTCGCTACGCCACCCCTCCCccgaggaggaggacgaggaagaGGGTGTCGCCACGGTGACATTTCCAGGTAGCAGGGCTGTGGAGCTGAGGAGCAGCCCCCCCCTGCACTGGTACCTGCGGGAGGAGAGGCTGGAGGTCCAGGTGTGGGTGGCGTTCGGAAAAGAGAGGAGGCTCAGGCCTCACGACTCAGACCGGCTGGTGGGCTCGGCTTATGTGGACCTCTCGGCGCTGGCAAGAGGGACTGGTCACAAGCTTGCCATAAGTGGCGTTTACCCGCTATTCAATCGCACCGCGCCCGACCTGTCTGGGGCTGTTCTCCGGCTGCACGTGGCCCTGACTCCGTACGGCTCTGCTGCCTTCCTGCCGCACACCCCCTATGGAGACGGCGAGGCTGAGGATGGTGGCAATGGCCACTACAGGTCTGAGGACAGCCTGCAAGAGCACCCTGCGTCTCCCCTTGAAAGCTGGTGCCAGAAAATAAGCTCAGCGCCTTCAGATCTTCCAGGCCTGCAGGTTCCTGATGTTGATGTGGCCGATACATTTGCTGTGTCAATCACTGTGGAAAGAGCCATGCATCTTAGCCTAAAagGCAGTCCCATGGTGGATCCGAGTGCCATGGACCCCAGTTGCTGTGTTTCTTACGCCACTGCTGACTTGGTGAATCCTGTCACCACTCAAGTCATACAGGAAAACAACTGCCCGGTCTGGGAACACCATCAGCAGACTCGgCTTTCAAAGGAAATACTGGTAGATCCACAGCAGACTCTGGTTTTCAAAGTCTGGCACAAAGGAGATGTAGAACGCGTGATTGGTTTTGCGTCTGTTGACCTGTCTCCCCTGCTGTCGGGGTttcagtctgtgtgtggatgGTACAACATCACTGACTTTAACGGGCAGTGCCAGGGACAGCTCAAAGTGGCCATCTCTCCTCTGGAGACAGTCAAGCAGCTCGGAGGACAGAGGCTGGCAAACATTAAAGGCAGCACAGAGGCGTCTGCAGTACCTCCTCACACAGCCCCCCTCTCGTATCGGACCACAGCGCTGTATAGCGCCTTCCCCACTCACATTGCCCGGTATCCAGAGCAGCTTATTAACACCTCCCCCGATCAGGCCGACATCCTTTCTGAGAGGTCCAGTGCATGTGGTCGCCACGAGGAGCACAGGGACAATGTGCGCCGAGTCCATCAGAGTCTGCAGCAGGGAGAGAGGCTCTCCTGGGACACGCAGGCCTCTGGCTCATCCCTCTTCACCGCTCTCAGaaaaaacCTAAGTGAGCTGGATGATATTCAGAGGTATTTCAGCCAGAAGCTGTCCACCCCAACTTTTCCTAGCCTTCGTGAGCACAGGAGTAAATCCGGACTGGAGAGCGCTGTGGGCCAAGAGCCGCAGCACCATGCCGACTGTCACAGCACAGACTCCTCACAGCTGTTAGAAAAGTCCAGCAAGTTGGTAGGGGAAGTGAACAACTTGATGAATGATCTACATGGGACAACTCTGCATGTCTCCTCTGAGCCACCTCACTTCCTGCCTCCGAGCAGCTGCAACGCAGGAGCCACAGCCCAGGACAGTGCCTCATCCACAGCAGAGTTCCCTGAGGTGCAGCTTCTCTTGCACCAGGAAGCAGACAACACCAACCAGGATGGAGGCTCTCTCCCCGCTTCCTCCGCTGTACCCAGCACCCATCAGCAGGTCAGTGTGGAGAACACCAGCGAGGGAAATGAGCGGCTCTCTGATCGCGATTGTGACGAGCGTGACGGCTTCGGAAGTGATTCACACAGTGAAGGCGACTATGAGGAGACAGTGGTCCAGCAGCGACCCCTCAATGACGTCACTGCGCTGACTGACAAAACCAGTCCCTGGTCCAGCCTACTGTCAGAGCCAGACATGGCCTCTGTGGAGGAGCTTGAGGAGCCGGCAGCGCAGGAACATCTCAACCGACAGTCGGACTCGTCCAGAGAGGAAAACATCATGGCAAGGGGCAGCCCTTTACCAGATATCTTACACGACGGTCACTCCAGCATGCCGGGCAGCGCGAGAACAGCCGAGTCGCCACAGTGGGGTGGCCGAGTGTGGCCTACAGAGTGGACCGAGTCGGATGAGAATGAAGAGGGTGCTGCAGACAGACTCGCCGGGCAGCCTGAGGCCTTGAGTGAAACGGAAGGAGAAGCCCAGGAtcaggagagaagaggaggtcAGGCGTCCACAGCCCCCCTCAGACTCAATTTCTCACTGGATGCGGAGGATCTTGATGACACGGGGAAGGACATCCACTCTGAGCCTTGCCACAGAAATAAAGATTCAGATGATGAGATACAGAGCCTATCGAATGCAGCTGAACATCTGCAGGACAGACCAGACAGCGGGCAGTCAGAGCGGGGAGCTTCTCCGTCAAAAGATGATGAGTCGCCCCTGACAAAATTAGCAGACTCCATGGTGATGCCCAATTTCTTTCTACCGACTCAACACCTGGAGATGTCTATGAGAGCCCTCCGGATTGCCCCGGTCTTCTCGTCAGCTTCCTCGCACCAGACAGGAACCTGTGTGCAGCAAGGAATTCCTTTCAGAAGAGCAACGCGACCGAAGCCCACTGTACCAACATCCTTCGCAAAGACAGAAGAAACTAAAAGAATTGCTAAGATATTTGCAGCTCAGTTTACAGAGAAGAAatagttgttttgtttcaaaccATTTCTTTTATGTCCATGCACCTGTGCGAGTGTGTGAAAGACAATGTGTGTAAATTATTATGTATAAACCAAATACCCCcagaattatttttgatttagattataccatttatatatataaatattataaaggTGAGTGtgaatgtacag

Function

GO: NA

KEGG:

id description
K16751 C2CD3; C2 domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016338 True 7151 mRNA 0.54 32 16822917 16849192

Neighbor

gene id symbol gene type direction distance location
AMCG00016339 NA coding upstream 15645 16794297 ~ 16807272 (+)
AMCG00016340 NA coding upstream 35975 16783466 ~ 16786942 (+)
AMCG00016346 NA coding upstream 82889 16736104 ~ 16740028 (+)
AMCG00016337 NA coding upstream 259699 16557238 ~ 16563218 (+)
AMCG00016334 NA coding upstream 302719 16506297 ~ 16520198 (+)
AMCG00016341 LOC103026990,LOC108277383,LOC108433282,LOC107743402,LOC107697442,LOC107578242,LOC100702672,LOC107653753 coding downstream 2301 16851493 ~ 16862051 (+)
AMCG00016347 NA coding downstream 33512 16882704 ~ 16922938 (+)
AMCG00016349 fam168a,LOC107600264,LOC107594362 coding downstream 119240 16968432 ~ 17007785 (+)
AMCG00016356 fchsd2,LOC107600282,LOC107594367 coding downstream 353814 17203006 ~ 17232829 (+)
AMCG00016355 NA coding downstream 384084 17233276 ~ 17240318 (+)
G12929 ppme1,LOC107715282 non-coding upstream 6586 16815577 ~ 16816331 (+)
G12907 NA non-coding upstream 147728 16674893 ~ 16675189 (+)
G12906 NA non-coding upstream 150421 16672132 ~ 16672496 (+)
G12901 NA non-coding upstream 198950 16623683 ~ 16623967 (+)
G12896 NA non-coding upstream 213932 16608718 ~ 16608985 (+)
G12966 NA non-coding downstream 27153 16876345 ~ 16876902 (+)
G13019 NA non-coding downstream 284122 17133314 ~ 17133530 (+)
G13021 NA non-coding downstream 294418 17143610 ~ 17146998 (+)
G13174 NA non-coding downstream 809565 17658757 ~ 17680909 (+)
G13266 NA non-coding downstream 1410076 18259268 ~ 18262343 (+)
AMCG00016329 NA other upstream 336914 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 2039382 14745316 ~ 14783535 (+)
G12587 NA other upstream 2384311 14437771 ~ 14438606 (+)
G12351 NA other upstream 3185916 13635442 ~ 13637001 (+)
G12349 NA other upstream 3191120 13631285 ~ 13631797 (+)
G13012 NA other downstream 267601 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 713226 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 1569825 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 3025864 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 4932914 21782106 ~ 21832148 (+)

Expression


Co-expression Network