AMCG00016339


Basic Information

Item Value
gene id AMCG00016339
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16794297 ~ 16807272 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016339
TTTGTGAATCCAGCATGGGAGATGGTGCCTGTAACGACGCCCGTGCATTCCTAATTTTGAATTTAACGAAGCAAAAGTGCgacaatatatattcaattaagcTGCACATGTGTTTTTACTTGTGAAAATGATTTACCGTCTGCATGTCAGATTGGGTGGAATAGTTACATGTCTGGAAATGCTCAGTGTTGTGGCACTTATGATCCTGACTCTGTTGCCTCCGTCTCTCAGTGAAATGTACACTTCTGTGGAGAATGTGCAACGAGCTTTTGCTGCGGAAAAGGAGCTTCTGACCCATTTAAGGACCTACATTGAAGATGAATCACTAAGATTGAACGACGTCAAGAGGTTCTATGAAAAGGTGTCTGGTTTGCACAGTCATGTATACCACAGCTCAGTGACCGCAATGGCTAACCCCCTGGTGGCGTATACACTGATTAAGAGACTACAGTCTGAGTGGCTCAATGTGGTCTACAGCAACGAAGCCCAAGAGAACTCCCAAGCCTTCAGGTCAGCCTTTGAGCAAGAAGAGAGTCAGCGGCCGAAGTTTGAGGATGTGGAGGGGGCTGCCAAGGGCTTGATGAGGCTCCAGGATGTGTACTCTCTCTGTGTGGGGGGCCTTGTGAACGGACACTTTCAGAGAGTCACTGCAGGCCAGATGGTGGACATTTACAGACCAGCCATCTCCATCCACCTGTCTGGAGATGACTGTTTCCAAGTAGGGAAGGTGGCGTATGAGATGGAGGATTACTATCACTCGGTGCAGTGGCTGGAAGAGGCAGCCCATCTCTTTCGTGGCGTGCAGGGTGCCTGGATCCTTGAGGATGAGGGGAACCTGGAGGACACTCTGGACCACTTGGCCTTCTCTCACTTCAAGACAGGAAACGTCTCCTATGCTCTGACTCTCTCCCAGGAGCTCCTGCACTATGATCCTTCAAACAAACGGGTTTACCGAAACATTGAAAAGTATGAGAAGCTCCTCTCGGCGTCTCCAGCTATAGATATCCGTGAAGTTGTACTACAGAGACCTAACACCACGTATCTGCAGACCAGAAACACCTATGAATGGCTGTGTCAGACCTTGGGATCACAGCCAAGACATTATGAAAACCCCAGGCTCTTCTGTGATTATTTTACTAATGGTGACTCAAGTCTGATCCTCAAGCCAATGAGACGAGAGGTCCTCAGCCTCCAGCCATATGTGGTTTTGTATCACAGCTTCGTCAGTGACTTGGAGGCAGAGAGCATCAAGGAATCGGCTCAACCTGGACTGAGGCGATCTGTGGTGGCTTCCGGCGATAAGCAGGCCACAGCGGACTACCGCATCAGTAAGAgTGCTTGGCTGAAGGACACAGCGCACCCTGTGGTGGGGAAGCTGGACCTGCGCATCACAGCGCTGACCGGGCTCAACCTGCAGGTTCCATATGCAGAATACCTCCAGGTGGTGAATTATGGGATTGGTGGACACTATGAGCCTCATTTCGACCATGCCACGTCGGATTCCAGTCCACTGTACAAGCTCAAATCCGGGAATCGCGTGGCAACATTTATGATCTATCTCAGCTCTGTGGAAGCAGGTGGATCAACAGCCTTTATCTATGCCAACTTCAGTGTTCCAGTAGTTAAGAACGCAGCCCTGTTCTGGTGGAATCTGCACAGGAATGGTCAAGGCAACGGGGACACTCTCCACGCTGGCTGCCCAGTCCTGGTTGGAGATAAGTGGGTGGCCAACAAGTGGGTACATGAGCACGGCCAGGAGTTCCAGAGACGCTGCGGCTCCAATCCAGACGAGTGAGGAGGAGACTGGGAGGCGGTGGGACCGGTTGGAGTACAAGAACCATCCTTAGAGCTGGAGCTGTGTGGGaacgggggaggggggaggacaCGGCTTCGGACAAGACTGCCATGCTGATTGGAGGGGCCTGCTGGAAGAGGGG

Function

GO: NA

KEGG:

id description
K00472 P4HA; prolyl 4-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016339 True 1937 mRNA 0.52 13 16794297 16807272

Neighbor

gene id symbol gene type direction distance location
AMCG00016340 NA coding upstream 7355 16783466 ~ 16786942 (+)
AMCG00016346 NA coding upstream 54269 16736104 ~ 16740028 (+)
AMCG00016337 NA coding upstream 231079 16557238 ~ 16563218 (+)
AMCG00016334 NA coding upstream 274099 16506297 ~ 16520198 (+)
AMCG00016330 NA coding upstream 310355 16465451 ~ 16483942 (+)
AMCG00016338 NA coding downstream 15645 16822917 ~ 16849192 (+)
AMCG00016341 LOC103026990,LOC108277383,LOC108433282,LOC107743402,LOC107697442,LOC107578242,LOC100702672,LOC107653753 coding downstream 44221 16851493 ~ 16862051 (+)
AMCG00016347 NA coding downstream 75432 16882704 ~ 16922938 (+)
AMCG00016349 fam168a,LOC107600264,LOC107594362 coding downstream 161160 16968432 ~ 17007785 (+)
AMCG00016356 fchsd2,LOC107600282,LOC107594367 coding downstream 395734 17203006 ~ 17232829 (+)
G12907 NA non-coding upstream 119108 16674893 ~ 16675189 (+)
G12906 NA non-coding upstream 121801 16672132 ~ 16672496 (+)
G12901 NA non-coding upstream 170330 16623683 ~ 16623967 (+)
G12896 NA non-coding upstream 185312 16608718 ~ 16608985 (+)
G12886 NA non-coding upstream 260916 16533104 ~ 16533381 (+)
G12929 ppme1,LOC107715282 non-coding downstream 8305 16815577 ~ 16816331 (+)
G12966 NA non-coding downstream 69073 16876345 ~ 16876902 (+)
G13019 NA non-coding downstream 326042 17133314 ~ 17133530 (+)
G13021 NA non-coding downstream 336338 17143610 ~ 17146998 (+)
G13174 NA non-coding downstream 851485 17658757 ~ 17680909 (+)
AMCG00016329 NA other upstream 308294 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 2010762 14745316 ~ 14783535 (+)
G12587 NA other upstream 2355691 14437771 ~ 14438606 (+)
G12351 NA other upstream 3157296 13635442 ~ 13637001 (+)
G12349 NA other upstream 3162500 13631285 ~ 13631797 (+)
G13012 NA other downstream 309521 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 755146 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 1611745 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 3067784 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 4974834 21782106 ~ 21832148 (+)

Expression


Co-expression Network