AMCG00016340


Basic Information

Item Value
gene id AMCG00016340
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16783466 ~ 16786942 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016340
CAGTGTGTCGGTGGTGCTGAGGATCTGCGTGGTCACTCCGCTTTTCGGCATCTTCCTGTGCTTCATCATCCTGATGCTGTACACAATGGCCTCTCGCCGGCAGTTCTGGGACAATTCCCGTTACATCCTGTTCACCTACATGCTGATCAACGACACTCTCCAGCTGCTGTTCACGGTGCTCCTCTTCCTGTTTACCATGACCGGCGTGCGCATGGCCATCGTCTTCTCAAATACCACCTCTCCTGCCAGCAGTGTGTCGGTGGTGCTGAGGATCTGCGTGGTCACTCCGCTTTTCGGCATCTTCCTGTGCTTCATCATCCTGATGCTGTACACGATGGCCTCTCACCGGCAGTTCTGGGACAATTCCCGCTACATCCTGTTCGCCTATATGCTGATCAACGACACTCTCCAGCTGTTGTTCACGGTGCTCCTCTTCCTGTTTACGATGACCGGTGTGCGCATGGCCTTTGTCTTCTGTGGGTCGCTGTTGTTCATCTCCAGCGCCACCTACCAGAACACACCCTTCATCCTGGCCACCATGTCTCTGGAGCGCTACATCGCCATCTGTTACCCCCTGAGGCACCAGGAGATCTGCCGAGTGGACAGGACCTGGGTCGTCATCCTGGCGCTGTGGCTGACGAGCTGTATCATTCCCACCATCAATTTTGCTTTGGTGGGCTATTACTCCATCGACGTGTACTCCACCCCGGTCACCTGCGTGACAAAGCTCCTCAACTCCTCCCACATTCAAACGCTCTTCAAAGTCACAGTGAATGCCTTGTTTCTTGCTCTGGTCGCCACCGTGATCCTGTCCACCTACATCAGGATACTGCTCAAGGCCAAGAGGATGCGGTCTGACAAGGCCCCTGTGAACAAAGCCCTGCACACTGTCATTCTGCACGGCGTCCAGCTGCTGCTCTGCATGATGTCTTACACTTATCCTGTCACAGAGGGCCTCATAGTGGTTCAGGTGGGGTGGCTCAGGGAACACATCTCCTTCTTCAACTACTTCTGTTTCATTCTCCTGCCCCGCTTCCTCAGCCCCCTGATCTACGGCCTGCGAGATGAGAACCTGAGAGTTCACATGAAGGGGTCCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016340 True 1099 mRNA 0.55 2 16783466 16786942

Neighbor

gene id symbol gene type direction distance location
AMCG00016346 NA coding upstream 43438 16736104 ~ 16740028 (+)
AMCG00016337 NA coding upstream 220248 16557238 ~ 16563218 (+)
AMCG00016334 NA coding upstream 263268 16506297 ~ 16520198 (+)
AMCG00016330 NA coding upstream 299524 16465451 ~ 16483942 (+)
AMCG00016323 pcf11 coding upstream 322151 16446628 ~ 16461315 (+)
AMCG00016339 NA coding downstream 7355 16794297 ~ 16807272 (+)
AMCG00016338 NA coding downstream 35975 16822917 ~ 16849192 (+)
AMCG00016341 LOC103026990,LOC108277383,LOC108433282,LOC107743402,LOC107697442,LOC107578242,LOC100702672,LOC107653753 coding downstream 64551 16851493 ~ 16862051 (+)
AMCG00016347 NA coding downstream 95762 16882704 ~ 16922938 (+)
AMCG00016349 fam168a,LOC107600264,LOC107594362 coding downstream 181490 16968432 ~ 17007785 (+)
G12907 NA non-coding upstream 108277 16674893 ~ 16675189 (+)
G12906 NA non-coding upstream 110970 16672132 ~ 16672496 (+)
G12901 NA non-coding upstream 159499 16623683 ~ 16623967 (+)
G12896 NA non-coding upstream 174481 16608718 ~ 16608985 (+)
G12886 NA non-coding upstream 250085 16533104 ~ 16533381 (+)
G12929 ppme1,LOC107715282 non-coding downstream 28635 16815577 ~ 16816331 (+)
G12966 NA non-coding downstream 89403 16876345 ~ 16876902 (+)
G13019 NA non-coding downstream 346372 17133314 ~ 17133530 (+)
G13021 NA non-coding downstream 356668 17143610 ~ 17146998 (+)
G13174 NA non-coding downstream 871815 17658757 ~ 17680909 (+)
AMCG00016329 NA other upstream 297463 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 1999931 14745316 ~ 14783535 (+)
G12587 NA other upstream 2344860 14437771 ~ 14438606 (+)
G12351 NA other upstream 3146465 13635442 ~ 13637001 (+)
G12349 NA other upstream 3151669 13631285 ~ 13631797 (+)
G13012 NA other downstream 329851 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 775476 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 1632075 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 3088114 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 4995164 21782106 ~ 21832148 (+)

Expression


Co-expression Network