AMCG00016344 (ppme1,LOC107548200)


Basic Information

Item Value
gene id AMCG00016344
gene name ppme1,LOC107548200
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16811036 ~ 16822370 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016344
TGCTGCGCTGCAACACGGCGCTGCTGTGGGAGAAGATCGTCAATGTATaggaacatttttttaatctctgttgCAATCTGAACTGCGGACGATTTAGTGCGTTTTGGGGGCTAAATCGAGTGGAGCGAAGGGGAGGGGAAAGTATATTTAGTATCTTAAGGAAAGCTTTTTTGTTAACGTAATAAAACCCTTAGTGAGCAACATGGAGAAACAATTACATCTAAATCGACTGTCTTCCAGACCTCCTGTaccaggaggaggaggtggtttTCAGTCAGGATCTAAAATGAGAATGGGAAGTGGTTCAGAAGGCCCGGTTCTTCTGCTGTTGCACGGCGGAGGACATTCGGCTCTGTCATGGGCAGTCTTCAGCgCGGTGATATTTAACCGGATCAGCTGCAGGGTGGTGGCTATGGACCTAAGGGGACACGgtgacacaaaagtaaaaaattgCGATGACCTTTCAGCAGAAACCATGGCCAAGGACATTGGTAAGGTGGTTGAAGCACTGTATGGAGAAAATCCTCCACCAATCATGATGATCGGTCACAGCATGGGTGGTGCTATAGCCGTGCACACAGCAGCAGCCAATCACGTGCCATCCTTGCTCGGCCTTTGTGTGATCGATGTGGTGGAAGGGACCGCAATGGATGCTTTAAACAGTATGCAGAATTTCTTGCGGAGTCGACCAAAAACCTTCAAATCTGTGGAAAATGCCATCGAATGGAGCGTGAAAAGTGGACAGATCAGGAACATCGAGTCTGCACGTGTGTCAATGATTGGACAAGTTAAAAAGTGTGAGGATCCCCTGGATAGCCCTGCTATCTCCAAGAGCATCGTTGAGGGAATAatcgaggaagaggaggaggaggaagaggagagagagtctaacaataaaagaaagaaagatgacGATCTGGAGGTGAAGAAGGAGTGCCTGTACACATGGAGGATTGAGCTGGCCAACACAGAGAAGTACTGGGATGGCTGGTTCAGGGGGCTGTCCAGTCTCTTCCTCAGCTGCTCTGTTCCcaaactgctgctgctagcaGGTGTTGACAGACTGGATAAAGATCTCACAATCGGACAGATGCAAGGAAAATTTCAGATGCAGGTCCTCCCTCAGTGTGGACATACGGTACATGAGGACGCCCCAGAAAAAGTAGCTGAAGCTCTGGCAACATTTATGGTTCGTCACAAGTTCACAGAAGCCAAGGGGGGTTTCCAGTGCGTGTTTCCAGCTTGCTAATAGCCTTCCTCACTGAATTACTGTGTAAATAACAAGCGCCAGAGGCCACTGTGACGTCCCTCATCAGACTAGTCTCCattcaacaataaaacaacctaCAAAAGGCAGTCATGATTTAGATGGGCAAACAAAAGGGCAGATATTTCAGCTACAGAATCTGctttggcttttttgttttttggtattgttattattattaatgtaaattgtaCTACTGTAATATTACAAAGCAAAATACCTTTCTGTTGCCATGACCTTATTCAAGGTTTTGCCTTTTCAAGAATGCAGGGATTTCCTTTAGTTttaccttttttcattttttctgatttctgtgATGCCTTTTGCTGTTCTAGCCCTGGACTCTTGAGTGACTAGTATCATTGCCGGATTGTGTATCTCATGGTTGgtttttaagaataataaagtaaaaaaactcCTGTAAGCAAATGTAGCAAACTTGATCCTCTTGGGCTTTCAATTgaaaagcatatatttttacatgtactTAAATTAACCATAAATAATCTGTTATGTTTACCACAAGGTGGCAGCATTGTTCTGTTCAATGTAGGGTTTCTTTATAAAAGGGAAATCCTTCTAtccataaattatattaaagctTGTGACCAATACCATAAAACGCACGTTCAAGACCTGTTAcctgtttgttttacataatgTACTTTAACACATCAGTCAATATGCTAATTAAGGGGCAAACTACTCtatttaatagttatttaaaaGGTAAGGTGTTTTATGCAACATGCAATTTGTTTCCCAGATCGGAACAGTATTAATTTTGGCCCActcttttgtttaaataatgtaacataaaaTGGAATTTCATTAAGTGTAACAATTAATGGTAACCAGAAACTGCAGTGAAAGTCTGTTCAAACTTTCATCTGTACCTGAAACAACTGGCCACAAGGTGTCAGTACATATCCAACAGCTAAACCCACAATCTGAAGCCC

Function

symbol description
ppme1 Predicted to enable protein methylesterase activity. Predicted to be involved in protein demethylation. Orthologous to human PPME1 (protein phosphatase methylesterase 1).

NR:

description
PREDICTED: protein phosphatase methylesterase 1-like

GO:

id name namespace
GO:0006482 protein demethylation biological_process
GO:0052689 carboxylic ester hydrolase activity molecular_function

KEGG:

id description
K13617 PPME1; protein phosphatase methylesterase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016344 True 2226 mRNA 0.42 13 16811036 16822370

Neighbor

gene id symbol gene type direction distance location
AMCG00016336 LOC107680719 coding downstream 36164 16757415 ~ 16774872 (-)
AMCG00016335 NA coding downstream 58046 16587491 ~ 16752990 (-)
AMCG00016333 NA coding downstream 224370 16576609 ~ 16586666 (-)
AMCG00016331 NA coding downstream 302629 16504216 ~ 16508407 (-)
AMCG00016332 NA coding downstream 324156 16486461 ~ 16486880 (-)
AMCG00016343 NA coding upstream 38810 16861180 ~ 16864392 (-)
AMCG00016342 NA coding upstream 53902 16876272 ~ 16880591 (-)
AMCG00016348 NA coding upstream 107058 16929428 ~ 16938560 (-)
AMCG00016350 NA coding upstream 187361 17009731 ~ 17023094 (-)
AMCG00016351 LOC106613240,LOC107600776,LOC107577125 coding upstream 217935 17040305 ~ 17071447 (-)
G12921 NA non-coding downstream 19367 16791423 ~ 16791669 (-)
G12915 NA non-coding downstream 61117 16749719 ~ 16749919 (-)
G12902 NA non-coding downstream 187130 16623683 ~ 16623906 (-)
G12897 NA non-coding downstream 202092 16608718 ~ 16608944 (-)
G12894 NA non-coding downstream 214816 16595678 ~ 16596220 (-)
G12978 NA non-coding upstream 96196 16918566 ~ 16924672 (-)
G13045 rps3 non-coding upstream 419574 17241944 ~ 17246330 (-)
G13065 clns1a,LOC102781126 non-coding upstream 462033 17284403 ~ 17286829 (-)
G13091 NA non-coding upstream 552896 17375266 ~ 17377539 (-)
G13126 NA non-coding upstream 671485 17493855 ~ 17494346 (-)
AMCG00016327 NA other downstream 335866 16470611 ~ 16475170 (-)
AMCG00016293 NA other downstream 2019067 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 2383746 14420356 ~ 14427290 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 3251852 13543348 ~ 13559184 (-)
AMCG00016226 NA other downstream 3940476 12849878 ~ 12870560 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 36171 16858541 ~ 16861179 (-)
AMCG00016345 NA other upstream 43948 16866318 ~ 16870002 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 441231 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 715664 17538034 ~ 17541342 (-)
G13367 NA other upstream 2268869 19091239 ~ 19105381 (-)

Expression


Co-expression Network