AMCG00016345


Basic Information

Item Value
gene id AMCG00016345
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16866318 ~ 16870002 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016345
GCAGCTCTGCGCAGATGTGCGCTACGTCGACGCGCTCGGTGCGGCACGTTTTACGGCAGTGGCGTAGACAGAGGTAAACACCACAACATGGAATCACGAATTGTACTTCAAAGTGACTGGCCGAAAGTACTgagGAAAAACGAAGGAGAAGTGTGGGTCTCTTGCAAAATACCAGGGAAGCCCACCATCTACGGTACCCTGACATGTCAAGCCGTCAGTCACGATGCAGTCCCGGAGATCACGGCGTCGGAGCAGTTTGAAGTACTTGAGGTTTCAAAGAAAAGTATCCATATTGCCTGCCCTTCTGGAAGCACGTCATCAAAGTTCCTCATGCCGTTTACATCTTTTCCAGGAATTCATGACAAAAGTATAACTTGTCTGGACATATCATGTGGTGGAGGTCTTGGAGTATCTACCAGCACAGATGGCACAATGAAGATCTGGAACTGTAAAACTGGAGACAGAAGGAGGGAGCTGTCAGGCCATGTGTACGATGTCAACTGCTGCAAGTTCCTCCCCTCGGGAATGGTGGTGATCAGTGGAGGCATGGATGCCCAGGTCAAAGTCTGGTCCTgTATCCTGGACTTGGCCGCTGTGGACCGTGGGAGGAATGTGGTGTCGTGCTCACGAGACGGCACAGCGCGCCTGTGGGATTGTGGGAAGTCGGCGTGCTTGGCGGTGGTAGCTGACTGTGGTTCTCCTATCAATGGGTGCTGTGTGGGAGTGGCTGAGAACAGCATAAACCTGGGGGCACCGGAAGAACCCACAAGTGATCGAGAGATTGGAACTCAAGACAAACTGCTTCTCCTGGCCCGAGAGGACAAGAAGTTACAAGGCATTGGTCTTCAAAGCAGACAGCctATCTTTGCGTTTGATGGATCAGATGCATTCAATTGTTGCACTTTCCTCTCGAGTGTATATGTACTCGCAGGAACACAGGATGGGAACATCTACAAGTTAGATGTGAGATGTTTAAGGACACCTGTACAGATAATCCACAGGTCAGGAGCTCCAGTCCATTCACTGTTGCCTTTCAGGGAAGGCTTTGTTGTAAGCCaagGTGACGGAGGGTGTTTCATCCTTCAGCAGGACATGGATCATATCATTGAATTAACTGGGCCTGATGTGGATCCAGTCTATAAGGCTGCCGCATGGGAAAAAAGCATCTTCACTTGCAGCAGAGATGGACTTGTGAGGAAATACCAGCTCTCTGATCTCTGAACGCCCTTCCATTTACAGAAGTGGACCGAGGACAGTTGTGTGTGGCACACTTTCATaattcacattgtttttttacagatcTTATCTGAGCCAGATCACTGTCTTTCATTTCTGTGCTTTTCCTTTAGACATTCAGATTAAACACTCAGTGGCACATGGCTGTTCATTTGCAGGAGTCAATATGTATAGAggaactaaaatgtaaataaaatatttttccccAT
>TU16051
caaaagttaCCTTGATGCAGTTTTAAGTCTTGctgtgattgttgttttttgaaggTATCCTGGACTTGGCCGCTGTGGACCGTGGGAGGAATGTGGTGTCGTGCTCACGAGACGGCACAGCGCGCCTGTGGGATTGTGGGAAGTCGGCGTGCTTGGCGGTGGTAGCTGACTGTGGTTCTCCTATCAATGGGTGCTGTGTGGGAGTGGCTGAGAACAGCATAAACCTGGGGGCACCGGAAGAACCCACAAGTGATCGAGAGATTGGAACTCAAGACAAACTGCTTCTCCTGGCCCGAGAGGACAAGAAGTTACAAGGCATTGGTCTTCAAAGCAGACAGCctATCTTTGCGTTTGATGGATCAGATGCATTCAATTGTTGCACTTTCCTCTCGAGTGTATATGTACTCGCAGGAACACAGGATGGGAACATCTACAAGTTAGATGTGAGATGTTTAAGGACACCTGTACAGATAATCCACAGGTCAGGAGCTCCAGTCCATTCACTGTTGCCTTTCAGGGAAGGCTTTGTTGTAAGCCaagGTGACGGAGGGTGTTTCATCCTTCAGCAGGACATGGATCATATCATTGAATTAACTGGGCCTGATGTGGATCCAGTCTATAAGGCTGCCGCATGGGAAAAAAGCATCTTCACTTGCAGCAGAGATGGACTTGTGAGGAAATACCAGCTCTCTGATCTCTGAACGCCCTTCCATTTACAGAAGTGGACCGAGGACAGTTGTGTGTGGCACACTTTCATaattcacattgtttttttacagatcTTATCTGAGCCAGATCACTGTCTTTCATTTCTGTGCTTTTCCTTTAGACATTCAGATTAAACACTCAGTGGCACATGGCTGTTCATTTGCAGGAGTCAATATGTATAGAggaactaaaatgtaaataaaatatttttccccA

Function

GO: NA

KEGG:

id description
K11887 PAAF1, RPN14; proteasomal ATPase-associated factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016345 True 1445 mRNA 0.48 12 16866318 16870002
TU16051 False 924 lncRNA 0.40 6 16866319 16868327

Neighbor

gene id symbol gene type direction distance location
AMCG00016343 NA coding downstream 1926 16861180 ~ 16864392 (-)
AMCG00016344 ppme1,LOC107548200 coding downstream 43948 16811036 ~ 16822370 (-)
AMCG00016336 LOC107680719 coding downstream 91446 16757415 ~ 16774872 (-)
AMCG00016335 NA coding downstream 113328 16587491 ~ 16752990 (-)
AMCG00016333 NA coding downstream 279652 16576609 ~ 16586666 (-)
AMCG00016342 NA coding upstream 6270 16876272 ~ 16880591 (-)
AMCG00016348 NA coding upstream 59426 16929428 ~ 16938560 (-)
AMCG00016350 NA coding upstream 139729 17009731 ~ 17023094 (-)
AMCG00016351 LOC106613240,LOC107600776,LOC107577125 coding upstream 170303 17040305 ~ 17071447 (-)
AMCG00016353 NA coding upstream 233972 17103974 ~ 17117735 (-)
G12921 NA non-coding downstream 74649 16791423 ~ 16791669 (-)
G12915 NA non-coding downstream 116399 16749719 ~ 16749919 (-)
G12902 NA non-coding downstream 242412 16623683 ~ 16623906 (-)
G12897 NA non-coding downstream 257374 16608718 ~ 16608944 (-)
G12894 NA non-coding downstream 270098 16595678 ~ 16596220 (-)
G12978 NA non-coding upstream 48564 16918566 ~ 16924672 (-)
G13045 rps3 non-coding upstream 371942 17241944 ~ 17246330 (-)
G13065 clns1a,LOC102781126 non-coding upstream 414401 17284403 ~ 17286829 (-)
G13091 NA non-coding upstream 505264 17375266 ~ 17377539 (-)
G13126 NA non-coding upstream 623853 17493855 ~ 17494346 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 5139 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 391148 16470611 ~ 16475170 (-)
AMCG00016293 NA other downstream 2074349 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 2439028 14420356 ~ 14427290 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 3307134 13543348 ~ 13559184 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 393599 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 668032 17538034 ~ 17541342 (-)
G13367 NA other upstream 2221237 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 3258906 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 3746507 20616509 ~ 20636960 (-)

Expression


Co-expression Network