AMCG00016346


Basic Information

Item Value
gene id AMCG00016346
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16736104 ~ 16740028 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016346
ATGACAAATGTTTCATTAGTTTGGAACATCTTAACGTACCAACAAGAAATCAAGATCACAATGAATTGGGTGACAACACTGAAAATGATCATTGTTCTCTCAACTTGCTTTTTCTTCATCTCTGTGAACGGCATGATGCTGTTCGTCCTGAGGAGCAAGCCCTCCTTCAGAGAGACCCCCCGCTACATCCTGTTCGCCCACATGCTCCTCAACGACTCCATTCACCTGCTGATCAGTATGTTGCTGTATATCCTTGCCATGCTGTATCTGCACCTCGTCAGGGCTGTGTGTGCGGTGCTTGTACTACTGTCCAGCACCACCTTCTATAACACTCCTCTAAACCTCGCTGTGATGGCTCTTGAGCGCTACATAGCTATCTGCTTCCCACTGCGGCACAGTGAGATGGCTACCCCTCAAAGAACTGGAGTTGCCATAGCCGTGGTTTGGTTTCTTGGCTCTGTAAACCACCTCATTGATGTTTTTGTTCCTCTGATCACAGAACCCTCTTTTTTACTGACGCCTGTTTTTTGCACACGTGAacagattttaatgtttaaatggcaGGCCAATGTCTATCAAGGAttcacagctttttattttgtgtgcgtGGGACTCATTCTCGTGTTCACGTATGTTGCCATCATGCTGGAGGCCAGGTCTGTCTCCTCTGACAAAGCTTCAGTGACCAAGGCACGCAATACAGTGTTACTGCACACAATCCAGCTGTGCCTGTGCCTCACCTCCTTCCTGTATGGAGTGATAGAAGCCCTGATCGCAAGGATGGATGCGTCTGTCTTCATTCACCTGCGGTACATGAACTTCATTGTTCTCCTCATTCTGCCCAGATGTTTAAGTCCATTAATATACGGTTTAAGAGATGAGAGTTTAAAgacaatttttaaatattacttaaCATGTGGTAGCAAGAAAGTAAAGCCTATGACAAATGTTTCATTAGTTTGGAACATCTTAACGTACCAACAAGAATCCAAGACCACAATGAATTGGGTGCCAACACTGAAAATGATAATTGTTCTCTCAACTTGCTTTTTCTTCATCTCTGTGAACAGCATGATGCTGTTCGTCCTGAGGAGCANNNNNNNNNNCAGAGAGACCCCCCGCTACATCCTGTTTGCCCACATGCTCCTCAATGACTCCATTCACCTGCTGATCAAACCCTCTATTTTACTGACACCTGTGTATTGCAAATATGAacagattttaatgtttaagtGGCAGGCCGATGCCTTTCAAGGAttcacagctttttattttgtgtgcgtGGGACTCATTCTTGTGTTCACGTATGTTGCAATCATGCTGGAGGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016346 True 1329 mRNA 0.44 3 16736104 16740028

Neighbor

gene id symbol gene type direction distance location
AMCG00016337 NA coding upstream 172886 16557238 ~ 16563218 (+)
AMCG00016334 NA coding upstream 215906 16506297 ~ 16520198 (+)
AMCG00016330 NA coding upstream 252162 16465451 ~ 16483942 (+)
AMCG00016323 pcf11 coding upstream 274789 16446628 ~ 16461315 (+)
AMCG00016322 NA coding upstream 301055 16430090 ~ 16435049 (+)
AMCG00016340 NA coding downstream 43438 16783466 ~ 16786942 (+)
AMCG00016339 NA coding downstream 54269 16794297 ~ 16807272 (+)
AMCG00016338 NA coding downstream 82889 16822917 ~ 16849192 (+)
AMCG00016341 LOC103026990,LOC108277383,LOC108433282,LOC107743402,LOC107697442,LOC107578242,LOC100702672,LOC107653753 coding downstream 111465 16851493 ~ 16862051 (+)
AMCG00016347 NA coding downstream 142676 16882704 ~ 16922938 (+)
G12907 NA non-coding upstream 60915 16674893 ~ 16675189 (+)
G12906 NA non-coding upstream 63608 16672132 ~ 16672496 (+)
G12901 NA non-coding upstream 112137 16623683 ~ 16623967 (+)
G12896 NA non-coding upstream 127119 16608718 ~ 16608985 (+)
G12886 NA non-coding upstream 202723 16533104 ~ 16533381 (+)
G12929 ppme1,LOC107715282 non-coding downstream 75549 16815577 ~ 16816331 (+)
G12966 NA non-coding downstream 136317 16876345 ~ 16876902 (+)
G13019 NA non-coding downstream 393286 17133314 ~ 17133530 (+)
G13021 NA non-coding downstream 403582 17143610 ~ 17146998 (+)
G13174 NA non-coding downstream 918729 17658757 ~ 17680909 (+)
AMCG00016329 NA other upstream 250101 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 1952569 14745316 ~ 14783535 (+)
G12587 NA other upstream 2297498 14437771 ~ 14438606 (+)
G12351 NA other upstream 3099103 13635442 ~ 13637001 (+)
G12349 NA other upstream 3104307 13631285 ~ 13631797 (+)
G13012 NA other downstream 376765 17116793 ~ 17121932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 822390 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 1678989 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 3135028 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 5042078 21782106 ~ 21832148 (+)

Expression


Co-expression Network