AMCG00016355


Basic Information

Item Value
gene id AMCG00016355
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17233276 ~ 17240318 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016355
ATGGAGAAGTCTACATTATATTTCGAGACGCCGAAATCCTGCGTGAAAATATTCTTATGCGCCAATCCCGCGGATTCCCAAGAGGAGAGGAAAGCCCTCCGGGACACCGTGTACCCCAAAATAAGGGAGTACTGCCGGTACACCTACGGCCTGGAGTTCAGGGTCATCGACGCCTATGATGGCCTGGATCCCGATGACGTCCTCGACTCCAGAGCCCAGCAGGTTCGGCTGCAGCTGCTAGAGGAGTGCAGGGAGAGCTCTGCCGGACCTTTCTTTGTGGCTCTGATTGGGGAGCAGTACGGCGACCCCTGTCTCCCTGTGCAGATCGAGGTAGACGAGTTCCAGGAGGTGCTGCAGATGTGCCAGCAGGCCAGTGTGAGTACCCAGCTTCTGGATCACTGGTACCAGAGGGACGAGAATGCCATCCCACCTGCCTACTGCCTGCTGGACAAACAGGAACTGCTGCCCAACTACTACTGCCAGACAGACAAGAAAGCTAGAGAAAGGGATCGGCAGGAGTGGCAGGAAGCCTTCCAAGAAATGAATATGATTTTTCATGCCATTGTCTCCAGATGTATCCAAGAAGGAAAATTAGGCCCagagatggaaaataaatacttcactTCAGTCCTTGAAAGAGAATTGCGTTTCGCACTTGAAAACCGTTCCAACGAGGATGTCAGAAGGTGTCTATGTTACGTTCACAAGATCTTCAACATGAGCCGACAGAGGGAGAGGACAGCAGGACAACAGTCTGGACTCCTTAGCGACCCTGATCTGCAGGCCTTTTGCCACACCAAGTCCAATACCTTGCTCTGCAAACTGCGAGAAGACTTCCTGCCCTGTATGGTTGCTTCCTCTGAGCTCCAGGTGTACACTTCCACCACCACCTGTGAGCTTCGACAGGGCTACACCTCTGAGATGAGGCAGGGATACATAGAGGGCCTCTGCAAGCAGTTCTACACCAATGTGTTGAATCTCATTGACGTCACGGTCTCCAGAAACACGTCTCAGATCGACTCACTCACAGAAGGCATCCTGCAGCAGGCTGACTTGTGCAGCATCTATTCTCATCTCTACAGGATCCAGTGTGCTGAGGTGGAGCAGATTAAAACATACCTTACGCAGAAGGAGACCAAATATCCACTCATCGTGAGTGGAGGTCCTTGCACTGGAAAAACTGTGTTTCTTGCACACTGTGCTAAACAGGCAGACATTTGGCTCCGTGACAAGGATCCAGTCATCgttgttcattttattaaaggtgACAATGATACTCTGAAGCAGCTTCTCTCAAGTGTTTGTCAACAAGTGGCCGTTAGCTATGGTCAGCCATTGCTGTGCATCCCCAAAGATATCAGTCAGCTAAAAGAAGATTTTTTAAACCTTCTCAGTGCACCCTCTGAAGAGCGGCCTTTAGTTCTCATACTGGATGGTCTCGACCAGATCTCAGAAGCTTACAAATCTCAGAGCATTTGGTGGCTTCCCAGGTCTTTACCTCCCAATGTTAAGTTCTTAATTTCCACAGCACCCAGGAAGTTTGGCATTTTGCAGGCACTCAAGGCTCTGTACACTGATCAGTCTCAGTTTGTAGAATTGGCACCAAAAGAGAGGAAGGATTGCAGTAAGATGCTAACAGAGCTTCTTTTCTCTTCCAAAAGGAGGGTCACCTCAGGACAACAGATATATGTCAATAAAGCCCTGAATGACTGCAGCCTCACACTCTACGTTGAGTTGCTGCACAGGCAGGTGAGTCATTGGCGTTCTGATGTGGAGATCACAGGAGATTCAGTAAGAAAGGGAGTCCATGAGAATATTAAGTGGTTCCTTGACCAGCTTGAGgaaaaacatggaaaagagatgGTCTCCAAAGCCATATGCTATCTGACCCTTGCCAAGTCTGGAATCACAGAGACTGAATTAACTGATCTGTTGTCTTCAGAAGACAACGTGCTCATGCAGTTCCTCCCCCAGGAAGACCTGCCCTTAAAACTGAGGGTCCCTGAGTCAGCAGTGGAGAAGTTGCTGCTTGATCTGAAGGGCTTTCTGGTGAGACGGTATCTCTTGGGATCTCAGGTGCTGTTCTGGGTAAGCAGACACTTTCCACTGGTCATTTACAAGCTCTACCTCAGCTCTGATAAGAGAGTACAGGAGATTCACAATGCAATGTCCAACTACTTCAATGGCCGGTGGGCTTACGGCAGAGCCAAGCCTTTGATCATCAACCAGGGTCTCACAACACAAACCAAACGTTTGCTCTCTCCTCCCCAGGCTTTCTCAAACAGCCCTCTGGTTAAAATTTACATTGACAGACAGCAGCCGTCCCAGCCTTGGCTCTTTAAGTctttttttagtaatttaagGAAAACTCATGAACTACCGTTTCACTTGAAAGCAAGTGGTCGACTTGAGGAGCTGAGCAGGAGTGTGATGTTGTCTCTGGGCTTCCACCAAGCGATGCTGGAAGCTGGTCAGCTGAATGAACTTATCAATGAATTGGAAGAGACCTCACAGCTTGCTCTCTGTAAAGAGCTCAGACTTCTCGCTAGCATCCTGCGAAGTGCCACCTGCTTACTTCAGAGCCGCCCTGCAGACCTGACGATGGTCATTCAGATCAAATTGCTTCCATTCCTGGACATTTTCCCTGATTTGGTGAGCTACGCCAAGCAAATTTATCAGGAGGGCTTGAAGAAGTGTGGTGTCAGTGCTGTACGTTCTTCGGTCAGCTGTGTGCCTTCTATACGCACAGTCCTGCCAGGGGTGGACGTCTCCCCTATTGTTGATGTACTACAGACTCAGTGTGAAACAATAGCAATGCTCCTGGACAATGGTTGTGTTTGGGCATGGAAAGAAGATGTAGTGGATGGCTACAGACTGATTAACTCATCTGACTTACTGTTCTCCAGTGCCAAAAGTGCAGGAAATTTTCTCATGCtttcaacaaaatgtaacagaatGCTGTTGTGCAATATGGAGATGCCTACACTGATTTATGAAATAGATGCTCAGAAACCTGTTACCAGCTCTCCTGCAGCTGcggacactgcagtgcagggtTTCCTTATTGTTAACAGTAGGATTTTTGTATGGTTCCGAGATGCAAATTATGTCAGGATGTTTGACTTAAACACCGGAAGGCGACTTGGGCAGCTAGAGTGCCAGTATTGTGTCACATGTGTGTCATGTTCCTCCAATgaaaagtacatattttgtGGACAGGAGAAAAGCACAGTGTCCATTTTTGACATCCAGGATGAAGGGTTTCGTCTTGTTATGTCTTCCTCAAGCTCGGCAGGAACGTGTGTCATTGATGTACTGCATTCTGAGCTGAGAGGTGAAATGTCATGGGTGGACAGCTTTGGTAATGTTTTCGTGtggaatatacaaataatgGTTGAACCCACACTGGTGAAAGAGTGCTGCAACCTAGAGGACCAACAGAAGGTGTTGCACACTGAACATTCACCTGAGAACAGGACTTTCCTGATCTGTAAGCAGGCACACATTGTGCTGTGGGACACCTCCTCCTGGACAGTAAGTGACCAGTTTAAAGCCCCACGTAATAGAAGCTTTATCCAAGCTGTTCTCTCCAGCAACTGCTCTCTCATAATCGCTTCCCTAGAAAACTGTCAGTTCCTACTAGTTTGGAAAAGAATAACGGGACAGTGCATTTTACGTTTGGACATTGGCCACACCCAAGCCctgaaaatgatcaaatacCAATCAACCTTGGTGGCCATTGCAGCTAATGGATTCCTCACAGCTTGGGACTTGGATTTGATGTTGGGAGCTTCTTCAGTTTCCAAGACAGGAATAAAGATTAAAAGTGTTCTTGTCAGCTCCCAGGGGGAACACATTTATACAACCGATGGCTCGGATGGTGTGTTCAAGTGGGGCATGCTGACTGGCACCATAGAGGGCTGTTTCTGTCACGGGGACCCTGTTGAGCACTTTAAACTCACAGTGGCTGGTGAACATCTTGTCACTTCAGATTCCTCAGGGGACATTTACATCTGGAAGACGGACACAGGGGAAAACCAGCAGCGTATCCATGGTAATCACCCCTCCCATTTACTGATCACCCCCAACAGCCATTTTGTGGTGTCACTGTGTGAGAACAGTTTCTCCCGGGTTTGGAAACTCAACAGTGGCCATGTCGTGTGCAAGATTCATCTGTACCTGAAGAATGCAGTCATCACACCTGAGAGCACATTTGTTCTAGGGCTGCACAAGAGAGATCTCCTGGCTGTCAGTCTGTGGTCGGGCTGTATAAGCAAGAGGTTTTCCTGCTCTAGTGAATCTGATGTCATGGCCTTTCAGCCATTACTTGACTACACAGACTATGTGGCCTTAATCACCTCTTCAGGGGACCTGTACACCTGGAATCTTGCAGAGGAAACCATATGCCAGCAAGTTCAGTTATGTGTTCCCTCTCTAAACCAGCTGGACTTATTTCAGATCTCTTCAAGTGGAACATATGCTATGATCTCAACAGCTGGTGCCACCATTAGCATCATAGACACTCTAAACGGAAGGCTATATTCATTAGAGACGACAGCCCCCATCTTGTTTGTGAGCCTGACTGTATCGGGCAGCTACATTGTGTTCATTTGCGATGCTGAATCATCAAACTGTGTCTGTGACTTCCACTCCAAACCAGTTCTGAAGGTGGTCCAAGCCTCCAATGGGAGAAATGTAGGAGTTTGTTACCTATGCAAAAACCCTTCAGCCCTGACTGTTACTGATGACTCTAGTATTTATGTGGGATTTGAGGATGGCTCTGTGGGGATTTATGTGATTTCAGATGAAGCTGAGGGCAGGGTTAATGTCAAAAGACACATCAACCAGATAGGTGACAGGCAGCCCTACCTTAGTGAAGAGCCCAAAAGATGGCAGTCAATGGAATCCGCCAGTATTGTGTGGGTAGATTCTTCTACTGATCACCAACAGTGTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016355 True 4956 mRNA 0.48 7 17233276 17240318

Neighbor

gene id symbol gene type direction distance location
AMCG00016356 fchsd2,LOC107600282,LOC107594367 coding upstream 447 17203006 ~ 17232829 (+)
AMCG00016349 fam168a,LOC107600264,LOC107594362 coding upstream 225491 16968432 ~ 17007785 (+)
AMCG00016347 NA coding upstream 310338 16882704 ~ 16922938 (+)
AMCG00016341 LOC103026990,LOC108277383,LOC108433282,LOC107743402,LOC107697442,LOC107578242,LOC100702672,LOC107653753 coding upstream 371225 16851493 ~ 16862051 (+)
AMCG00016338 NA coding upstream 384084 16822917 ~ 16849192 (+)
AMCG00016359 rps3,LOC102795110 coding downstream 1561 17241879 ~ 17246793 (+)
AMCG00016358 NA coding downstream 7359 17247677 ~ 17250675 (+)
AMCG00016357 ints4 coding downstream 11232 17251550 ~ 17263292 (+)
AMCG00016363 NA coding downstream 25908 17266226 ~ 17278723 (+)
AMCG00016366 NA coding downstream 42258 17282576 ~ 17288324 (+)
G13021 NA non-coding upstream 86278 17143610 ~ 17146998 (+)
G13019 NA non-coding upstream 99746 17133314 ~ 17133530 (+)
G12966 NA non-coding upstream 356374 16876345 ~ 16876902 (+)
G12929 ppme1,LOC107715282 non-coding upstream 416945 16815577 ~ 16816331 (+)
G12907 NA non-coding upstream 558087 16674893 ~ 16675189 (+)
G13174 NA non-coding downstream 418439 17658757 ~ 17680909 (+)
G13266 NA non-coding downstream 1018950 18259268 ~ 18262343 (+)
G13267 NA non-coding downstream 1024884 18265202 ~ 18265406 (+)
G13270 NA non-coding downstream 1029715 18270033 ~ 18274439 (+)
G13273 grm5,LOC102779205,LOC106613232,LOC106581415 non-coding downstream 1047722 18288040 ~ 18288261 (+)
G13012 NA other upstream 111344 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 747273 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 2449741 14745316 ~ 14783535 (+)
G12587 NA other upstream 2794670 14437771 ~ 14438606 (+)
G12351 NA other upstream 3596275 13635442 ~ 13637001 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 322100 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 1178699 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 2634738 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 4541788 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 6625949 23866267 ~ 23882946 (+)

Expression


Co-expression Network