AMCG00016359 (rps3,LOC102795110)


Basic Information

Item Value
gene id AMCG00016359
gene name rps3,LOC102795110
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17241879 ~ 17246793 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016359
CATCCACCGCGCGGCACGCCTGCTATAAATGCACTTCCGCCGGAAGCGATTTCCCTTTCCTTTCAGCGGCTCGAAGCAAGATGACGGCCCAGATCTCCAAGAAGAGGAAGTTTGTTGCAGATGGCATCTTCAAAGCCGAGCTGAATGAGTTTCTGACTCGGGAGCTTGCAGAGGATGGCTACTCCGGGGTGGAGGTGCGAGTCACTCCCACCAGAACCGAGATCATCATCCTGGCCACACGGACTCAGAATGTTCTTGGTGAGAAAGGCCGCCGCATCCGTGAACTGACTGCTGTGGTGCAGAAGAGGTTTGGCTTCCCAGAGAACAGCGTTGAGTTGTATGCGGAGAAGGTTGCCACCAGAGGGTTGTGTGCCATCGCCCAGGCGGAGTCCCTGCGTTACAAGCTGCTGGGAGGCCTGGCTGTGCGCAGAGCCTGCTATGGTGTCCTGCGGTTCATCATGGAGAGCGGGGCCAAGGGCTGCGAGGTGGTGGTGTCCGGCAAGCTCCGAGGCCAGAGAGCCAAGTCCATGAAGTTTGTCGATGGCCTGATGATCCACAGTGGAGACCCCGTCAACTACTACGTTGACACTGCTGTCCGCCACGTCTTGCTCAGGCAGGGTGTGCTGGGAATCAAGGTCAAGATCATGCTGCCTTGGGATCCCAGTGGCAAGATTGGCCCCAAGAAGCCTCTTCCTGACCACGTCAGCATTGTGGAGCCCAAGGATGAGGTCCTCCCCACCACCCCCATGTCTGAGCAGAAGGGTGCCAAGCCAGAGGCCCCTGTCATGCCACAGGGCGGACCAGTCGCCACCGCATAAGGGTTTCCATCGACACCTGAAGATGGAAGTCCTCGGGGGATAAACTGTataaaatttcaataaaacagtaaaagacATTCcctggctttcttttttttttttaatggagagaATTACAGATTGTAGAATTGGGGATCTGTTTATCGGTGGGTGATAGCTTTGTAGTGtacaaacttgtcaaattaatatattgatcTTGTTGCAAAATGCCTGGAACAATATGAAAGCTGCACTATTAAAGTCAAATGTCCATCAGCTGTTTTCCTGTGTAAAGCTCTATGGACTGTATACTGAGCATATCGGTTTAATGTTTGCTGTTCGGTTttgtataaaaatgttgctttttcacAATGAAATAGGGTATGAGAGATCTTAAAAGCCAAGCTTGATTTTCGtaattgaaaattgaaagcttgttcacctagaaactcctgcATCAGTGCTGGAAAGCGCTTGTATCCAGTGCAGACGTGTGTTTCTGGCAGCACACAGAGCTGAgctcctcacccgtttcaatacAGACCCACCGGCACACATCTGAGACTGACAAGCACCGGAACCACGTCTAGTTTGCTGTATTATATCGGTTGATGTGCgattgtgaagcaaagatatgtctGAGTCCAAATTTACCcggatttcatggagatttttcAACTTAGAAATGACTCGGAATcgtgcatttcaggtctccaagtgtcaaaatctaattaaacgttttatttttg

Function

symbol description
rps3 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development and erythrocyte differentiation. Predicted to be located in mitochondrial inner membrane; ribosome; and spindle. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in nucleus. Orthologous to human RPS3 (ribosomal protein S3).

NR:

description
PREDICTED: 40S ribosomal protein S3-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0009790 embryo development biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02985 RP-S3e, RPS3; small subunit ribosomal protein S3e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016359 True 1546 mRNA 0.49 7 17241879 17246793

Neighbor

gene id symbol gene type direction distance location
AMCG00016355 NA coding upstream 1561 17233276 ~ 17240318 (+)
AMCG00016356 fchsd2,LOC107600282,LOC107594367 coding upstream 9050 17203006 ~ 17232829 (+)
AMCG00016349 fam168a,LOC107600264,LOC107594362 coding upstream 234094 16968432 ~ 17007785 (+)
AMCG00016347 NA coding upstream 318941 16882704 ~ 16922938 (+)
AMCG00016341 LOC103026990,LOC108277383,LOC108433282,LOC107743402,LOC107697442,LOC107578242,LOC100702672,LOC107653753 coding upstream 379828 16851493 ~ 16862051 (+)
AMCG00016358 NA coding downstream 884 17247677 ~ 17250675 (+)
AMCG00016357 ints4 coding downstream 4757 17251550 ~ 17263292 (+)
AMCG00016363 NA coding downstream 19433 17266226 ~ 17278723 (+)
AMCG00016366 NA coding downstream 35783 17282576 ~ 17288324 (+)
AMCG00016364 pak1,LOC101483196 coding downstream 74549 17321342 ~ 17341958 (+)
G13021 NA non-coding upstream 94881 17143610 ~ 17146998 (+)
G13019 NA non-coding upstream 108349 17133314 ~ 17133530 (+)
G12966 NA non-coding upstream 364977 16876345 ~ 16876902 (+)
G12929 ppme1,LOC107715282 non-coding upstream 425548 16815577 ~ 16816331 (+)
G12907 NA non-coding upstream 566690 16674893 ~ 16675189 (+)
G13174 NA non-coding downstream 411964 17658757 ~ 17680909 (+)
G13266 NA non-coding downstream 1012475 18259268 ~ 18262343 (+)
G13267 NA non-coding downstream 1018409 18265202 ~ 18265406 (+)
G13270 NA non-coding downstream 1023240 18270033 ~ 18274439 (+)
G13273 grm5,LOC102779205,LOC106613232,LOC106581415 non-coding downstream 1041247 18288040 ~ 18288261 (+)
G13012 NA other upstream 119947 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 755876 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 2458344 14745316 ~ 14783535 (+)
G12587 NA other upstream 2803273 14437771 ~ 14438606 (+)
G12351 NA other upstream 3604878 13635442 ~ 13637001 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 315625 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 1172224 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 2628263 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 4535313 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 6619474 23866267 ~ 23882946 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_12039863_12047999 RPS3.L, RPS3, RPS3.S coding CI01000054 null 12039863 ~ 12047999 (+)