AMCG00016360 (aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309)


Basic Information

Item Value
gene id AMCG00016360
gene name aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17263601 ~ 17266747 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016360
CCTCATTCAGGATTGAGCACGGCCAGTTTCCTGTACCTCTGTGCAgaataaaaagtacaatttaCTCCATGAGAAAGCAAATCAAGGCAAGCTGGGGAATCAACCCCGACGCGCTACGAGGAGCAGCGGCCAGCGAGCGACTGATCTCCCGCGGACAAAAACATACCAGCAAAGCACCAAACATGATTCAGAATTAACCCATGCTTTCAAACTTTACCGGCAGAGTGGGAGCCTGGGGGGAAAGCGGCGCTGAGCAGCCTCCACCCCACAACAACAGAGCAGCGCTGCTCCAGCAGCAGCATAAGGGTCTCCATCACCACTGCTTTTTTACTACATCACAGCCCGCACAATGTCCGCGTTACCTGCCGCCGTCTCCTGCAGCGCTCTCTCCAGCTGCGGGAACGTCAACTCCGGCAGGTCCAGGGCTGCTCCATAGCGCTCCAGGAAAGAGCAGACCACGGCGAAGCTGGGGCACAAACCGGGGCAAGAACCCGCCGCTGCCGCCGAAGCAGCCATTTTTTTCCAATGGGGGTGCAAGAGACTGGGCTTGGAGGACCGAGGACGGCCCACAATACACCGCGCCAGGGTAGTGTTGTGATAGTGGTGGAGGACTCGCAGGCCGAGCCGCCACTGGCCCAGAGGTCTTTGCGCGGAAAGTTAAATCACTAATGTAAACAAGTGGATGCTGGATGGAGTTGATTTCAAATAGTGACGGTCGGTGTTGAATTCGCTGGTGGCCATAAATCACACCGAAAAAGTAGAAACTGGCTCatgttaatggacaccaatgTAATGTGCTGTGAAAGGTGTCCTTCTTGCTGTAGAGGTATAGTCCCATCGATGTCCTATGCTCTGCTAAATATGActtgatgtttttaaatgtgcagatatatgtatgtgcagggaatacaaacaaaaggaaatgttaACGTCGTAGTTCATGAACGTGTTTTTGTTGAGGGTGTCCACCACAGAGACCCTGTAATTGAAATTCATAGATTTCAGACCCTGTTCTGTTATAAAGTAAATATTCAATCCGAGCTTTCCTGTTCCTcctaccattttttttttttactgaacttTTTGCGTCAATATTTTATTAGCTTTATCCTTTTAAATTTGCGTATCAAGTTTTCGTTTACACATAATGGCTGGAGGGGCGGCGCTAGGGCGGGCAGCCGTGCGATTGGAGCGGGCAGCCGGGCGCTCGTCCCTGGAGGTGGGTGTGCGCACAGACGGGCTGTTTCTTCCCAAAGAGGGTGAACGACGGCCATCGTGCCTTGTTGGGTTAGTGCCAGTTTGCCTCCATGTCCTCTCCAGAGATTGCATCTTTATCATGGGGTCACATGAAGGTGAAAGGATGCTCCACCTCCTACAAGGACTGTAAAGTGTGGCCAGGGGGGAGTCGTGCCTGGGACTGGAGAGAAACTGGCACTGATGTAAGCCTGCAGGAGCATCTTTGTCACACCAgtgattatttaaatacttaagACAAACCATAAACAAATGTGAAGCCTCTTTTCCTCTtaaacatttcctttctttttgatAAATTGCTAGAGAATGCAAACAAAAGGTGAGGAACACAACATTATTAGTTTCCACTTTGAAGGTCCGAATTCAATACTTTGATCCATGAGCCTCTCTGCTGAGCTTTGATGTGTTTTGAGCCCAGACCGCTAGAATGATCTAATCGGAGGTATTTCTAATGCCACTCAGGAAGCAGGAGTGTAGCTGCTATTGTTCTTTATCTTGGTTGAAAGTTGGCTTTGAATAGTGCATTCAGGAGCCACGGTGTGATATGTGCCAATGTCCCCTCAGCACCATCCTGGAGTCCAGCCTGCTGATCTGGAGGAGGTCTTGAAGAAGGGGGTGAATACACTGGTGATTGGACGGGGCATGAGCGAGGCGTTGCAGGTGCCGTCCTCCACGCTGGATTACATACAGAAGCAGGGAGTGGACGTGAAGGTGTTTCAGACAGAGAAGGCTGTCCGAGAGTACAACACCCTGGCCGGGCAGGGAGTCAAGGTGGGAGGGGTCTTCCACTCAACCTGCTGAAGTGGCGAGATCTAAATGTCAGACAGGTCGCTGCCAAGAGCTCTTGAAGAAGGCCTGTTTCTGTGGTGTGTTACTCTGCATGGATAGAGCAGTGATCTGTATGAATGAAACTTTAATCTAAAAAGTAAGACTTCCAGCtattggtctttttttttgtttgagttgtaaaaat
>TU16168
TCGCAGGCCGAGCCGCCACTGGCCCAGAGGTCTTTGCGCGGAAAGTTAAATCACTAATGTAAACAAGTGGATGCTGGATGGAGTTGATTTCAAATAGTGACGGTCGGTGTTGAATTCGCTGGTGGCCATAAATCACACCGAAAAAGTAGAAACTGGCTCatgttaatggacaccaatgTAATGTGCTGTGAAAGGTGTCCTTCTTGCTGTAGAGGTATAGTCCCATCGATGTCCTATGCTCTGCTAAATATGActtgatgtttttaaatgtgcagatatatgtatgtgcagggaatacaaacaaaaggaaatgttaACGTCGTAGTTCATGAACGTGTTTTTGTTGAGGGTGTCCACCACAGAGACCCTGTAATTGAAATTCATAGATTTCAGACCCTGTTCTGTTATAAAGTAAATATTCAATCCGAGCTTTCCTGTTCCTcctaccattttttttttttactgaacttTTTGCGTCAATATTTTATTAGCTTTATCCTTTTAAATTTGCGTATCAAGTTTTCGTTTACACATAATGGCTGGAGGGGCGGCGCTAGGGCGGGCAGCCGTGCGATTGGAGCGGGCAGCCGGGCGCTCGTCCCTGGAGGTGGGTGTGCGCACAGACGGGCTGTTTCTTCCCAAAGAGGGTGAACGACGGCCATCGTGCCTTGTTGGGTTAGTGCCAGTTTGCCTCCATGTCCTCTCCAGAGATTGCATCTTTATCATGGGGTCACATGAAGGTGAAAGGATGCTCCACCTCCTACAAGGACTGTAAAGTGTGGCCAGGGGGGAGTCGTGCCTGGGACTGGAGAGAAACTGGCACTGATCACCATCCTGGAGTCCAGCCTGCTGATCTGGAGGAGGTCTTGAAGAAGGGGGTGAATACACTGGTGATTGGACGGGGCATGAGCGAGGCGTTGCAGGTGCCGTCCTCCACGCTGGATTACATACAGAAGCAGGGAGTGGACGTGAAGGTGTTTCAGACAGAGAAGGCTGTCCGAGAGTACAACACCCTGGCCGGGCAGGGAGTCAAGGTGGGAGGGGTCTTCCACTCAACCTGCTGAAGTGGCGAGATCTAAATGTCAGACAGGTCGCTGCCAAGAGCTCTTGAAGAAGGCCTGTTTCTGTGGTGTGTTACTCTGCATGGATAGAGCAGTGATCTGTATGAATGAAACTTTAATCTAAAAAGTAAGACTTCCAGCtattggtctttttttttgtttgagttgtaaaaataaataaatacatctttaat

Function

symbol description
aamdc Predicted to be involved in positive regulation of fat cell differentiation. Predicted to be active in cytoplasm. Orthologous to human AAMDC (adipogenesis associated Mth938 domain containing).

NR:

description
PREDICTED: mth938 domain-containing protein isoform X1

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016360 True 2230 mRNA 0.49 3 17263620 17266747
TU16168 False 1255 lncRNA 0.31 4 17263601 17266135

Neighbor

gene id symbol gene type direction distance location
AMCG00016354 NA coding downstream 116616 17145993 ~ 17146985 (-)
AMCG00016352 NA coding downstream 140362 17122706 ~ 17123239 (-)
AMCG00016353 NA coding downstream 145866 17103974 ~ 17117735 (-)
AMCG00016351 LOC106613240,LOC107600776,LOC107577125 coding downstream 192154 17040305 ~ 17071447 (-)
AMCG00016350 NA coding downstream 240507 17009731 ~ 17023094 (-)
AMCG00016361 NA coding upstream 26341 17293088 ~ 17294875 (-)
AMCG00016368 myo7aa,myo7a,LOC107660700,LOC106581013 coding upstream 113684 17380431 ~ 17413600 (-)
AMCG00016367 capn5b,LOC108440168,LOC107706463,LOC107548164,LOC101464883 coding upstream 160757 17427504 ~ 17460486 (-)
AMCG00016369 dcun1d5,LOC106612886,LOC107600360,LOC107712802 coding upstream 199936 17466683 ~ 17472931 (-)
AMCG00016375 cul5,LOC107714978,LOC107554266 coding upstream 208671 17475418 ~ 17490419 (-)
G13045 rps3 non-coding downstream 17271 17241944 ~ 17246330 (-)
G12978 NA non-coding downstream 338929 16918566 ~ 16924672 (-)
G12921 NA non-coding downstream 471932 16791423 ~ 16791669 (-)
G12915 NA non-coding downstream 513682 16749719 ~ 16749919 (-)
G12902 NA non-coding downstream 639695 16623683 ~ 16623906 (-)
G13065 clns1a,LOC102781126 non-coding upstream 17656 17284403 ~ 17286829 (-)
G13091 NA non-coding upstream 108519 17375266 ~ 17377539 (-)
G13126 NA non-coding upstream 227108 17493855 ~ 17494346 (-)
G13129 NA non-coding upstream 229176 17495923 ~ 17496347 (-)
G13254 NA non-coding upstream 896040 18162787 ~ 18165770 (-)
AMCG00016345 NA other downstream 393599 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 402422 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 788431 16470611 ~ 16475170 (-)
AMCG00016293 NA other downstream 2471632 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 2836311 14420356 ~ 14427290 (-)
AMCG00016376 NA other upstream 271287 17538034 ~ 17541342 (-)
G13367 NA other upstream 1824492 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 2862161 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 3349762 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 3399395 20666142 ~ 20683024 (-)

Expression


Co-expression Network