AMCG00016369 (dcun1d5,LOC106612886,LOC107600360,LOC107712802)


Basic Information

Item Value
gene id AMCG00016369
gene name dcun1d5,LOC106612886,LOC107600360,LOC107712802
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17466683 ~ 17472931 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016369
GGAAGGAAGCACTTTGCAGTGCCGGTGTGAGAAAGTGCTGCTCGCTGCTGGGCTGCTGGATGGGGAGTTCAGCTGCTCTGCGCACAAAAGGAAGACAAAGTGTCCAAATTACAGGAGAAGCTGTCCGGACTGGCTGACATTCAGCACGTAtcacaaacatttcacaaactGAACTTAATAGAAGATTTTAATGGACAAGGTGACCAAACATACATAGAAAAAGTCCAGCTTAACCGAACTTCCACTGATTCCAACATGCCAgtaaaaaagaagagaaagtcCTCTGGTCCAGATGATCCAGGTCTgcgaaaatgtaaaataaccaGATGTGACTGTACAGAAAGGTTGCAGGCGAAACTGGACTACTTGCGATCCCAGCTCAATGACGGCACGGCATTCAAGAATATCTACAGATACGCCTTTGACTTCGCAAGGGACAAAGACCAGCGTAGCCTTGATATTGACACGGCAAAGTCTATGCTAGCTTTACTACTAGGAAGAACATGGCCCCTCTTCCCGGTTTTCAATCAATTTTTGGAGcaGTCGAAATATAAAGTGATGAACAAGGATCAGTGGTACAATGTCTTAGAGTTCAGCAGAACGGTCCATCCAGATCTCAGTAACTACGATGAGGATGGAGCATGGCCCGTGCTGCTTGATGAGTTTGTGGAGTGGCAGAAGGCCCGGCTGGCCTTATAGCGGGAGCAGAGCACGAGTGGATGATTGTCTTCTGTAAGAAGGGCACGCCTGCAAGCACAGAGGAAGGGCCACCATCCACAGAGTTATTGCTCAAGAGACTTTTACAgtgttaatttaatcaaatgggGAACTTCtcagtttcacatctgtcatgACAGTGAATATCCAGTGTTGTACCACCAGCTGggaatggtttttttttttttttttttttttttctcccctctttcTTTTTCGAGTCTTACCCTGTTTATAGTACATGTTTTCAGAACCAGAATAAAGAATGGAATTGTACCAAATCTGTGTTTGCGGTGGCCTACTGAGTCGAGCGCATTATTAAGATATCTGGAATGGGATACAGAGAGAGGAACTTGATTTTGGTTGTATTTACATGCAG

Function

symbol description
dcun1d5 Predicted to enable cullin family protein binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin-like protein binding activity. Predicted to be involved in positive regulation of ubiquitin-protein transferase activity and protein neddylation. Predicted to be part of ubiquitin ligase complex. Orthologous to human DCUN1D5 (defective in cullin neddylation 1 domain containing 5).

NR:

description
PREDICTED: DCN1-like protein 5 isoform X2

GO: NA

KEGG:

id description
K17824 DCUN1D4_5; DCN1-like protein 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016369 True 1096 mRNA 0.45 8 17466683 17472931

Neighbor

gene id symbol gene type direction distance location
AMCG00016367 capn5b,LOC108440168,LOC107706463,LOC107548164,LOC101464883 coding downstream 6197 17427504 ~ 17460486 (-)
AMCG00016368 myo7aa,myo7a,LOC107660700,LOC106581013 coding downstream 53083 17380431 ~ 17413600 (-)
AMCG00016361 NA coding downstream 171808 17293088 ~ 17294875 (-)
AMCG00016354 NA coding downstream 319698 17145993 ~ 17146985 (-)
AMCG00016352 NA coding downstream 343444 17122706 ~ 17123239 (-)
AMCG00016375 cul5,LOC107714978,LOC107554266 coding upstream 2487 17475418 ~ 17490419 (-)
AMCG00016374 NA coding upstream 30949 17503880 ~ 17506443 (-)
AMCG00016381 NA coding upstream 205199 17678130 ~ 17686737 (-)
AMCG00016384 LOC107548160,LOC108279362,LOC108440167,LOC103155416 coding upstream 223998 17696929 ~ 17704385 (-)
AMCG00016385 gria4 coding upstream 242837 17715768 ~ 17716983 (-)
G13091 NA non-coding downstream 89144 17375266 ~ 17377539 (-)
G13065 clns1a,LOC102781126 non-coding downstream 179854 17284403 ~ 17286829 (-)
G13045 rps3 non-coding downstream 220353 17241944 ~ 17246330 (-)
G12978 NA non-coding downstream 542011 16918566 ~ 16924672 (-)
G12921 NA non-coding downstream 675014 16791423 ~ 16791669 (-)
G13126 NA non-coding upstream 20924 17493855 ~ 17494346 (-)
G13129 NA non-coding upstream 22992 17495923 ~ 17496347 (-)
G13254 NA non-coding upstream 689856 18162787 ~ 18165770 (-)
G13334 NA non-coding upstream 1353263 18826194 ~ 18901976 (-)
G13339 NA non-coding upstream 1585474 19058405 ~ 19058673 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 199936 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 596681 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 605504 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 991513 16470611 ~ 16475170 (-)
AMCG00016293 NA other downstream 2674714 14785198 ~ 14791969 (-)
AMCG00016376 NA other upstream 65103 17538034 ~ 17541342 (-)
G13367 NA other upstream 1618308 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 2655977 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 3143578 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 3193211 20666142 ~ 20683024 (-)

Expression


Co-expression Network