AMCG00016372


Basic Information

Item Value
gene id AMCG00016372
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17528571 ~ 17532364 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016372
aTGGAAATCTTTGCCAGGAAGCATCTCGCTCAATCCGACGTCATTTCCTCCTCGGTGTTCGTCACGCTGTGCTGTCGGAGACTCTCCGGCTCTTCCGGGATTTTCTTCCACAGGCGAGCGAGGCTGCTGTCCAGGGTGCTGAAGCCATCATGGCTGGCCTTGGCGATGGAGAGCCAGTGTGATCCTGCCAGCCGGCCGGTGTGCAATGGGGTCCCAGAGAAGAAATCTGTGGCGTTAGTGGCTGAGGACCATGGGCAGCAGATCCTGGGTGTCCTTCAGAGTTTCAGGGAGAAGAATGCCTTCTTTGACTTCAGGATCCTGGTGAAGGAGGAAACTTTCCCCTGCCATCGCTGTGTGCTTGCGGCCTGTAGTGACTTCTTCAGGGCAATGTTTGAAGTGAACATGAGAGAGCGAGACGACAGCAGTGTGACAATGAGCAATTTGTCCCCCAAAGCCATCAGGGCCTTCCTGGATTTCGCCTACACTGGGCAGACAGAGATCACCGAGGAGAACGTGGACATGTTCTTCCAGCTGTCATCATTTCTGCAGGTGTCCATCCTATCAAAAGCTTGCAGTGATTTTCTCATCAGAATCATCGACCTCACCAACTGCTTGCAGCTGCTGTCTATATCGGAGGGCTACGGCTCCACTCGGCTGTACGGGCGCGCGCTGGAGTTTGTGGTGCAGCACTTTGACACCCTGACCAGGTCGCCCGACTTCCTGGAGATGAACTACAGCATCCTCAAAAAGTGCCTGGAGGCAGACGAGCTCAACGTGCGCGATGAGGAGGCCGTGCTGCATGCCGTCCTCCTGTGGACCAAGCATGACCCGGAATCCCGGCAGAGGTTCTTCCTCCCATTATTCACACTGATCAGGCTCCACCAGATGCCCAGGGCGGTGTTGGAGGAGTTGTCCAAGTATGAGAGCCTGGTGTACAACAATGGGGACTGCCTGCAGATAATCAGGGAGGTGATCAGAAGCCTCCACGACCTCAGCGGCTTTTTCCCTGATGCCCGTCCCTCCACCACTGAGAAGTACATCTATGTCCACAAGACAGAGGAGAACGGAGAAATACAGCACACTTTCTGCTACAACATAGACACAGACCGCTGGAAAGAGCTGCCACAGTCCCATATTGTGGACATGTCCGGGTCCAGCTTGGCCAGCTTTGGGGAGAAGCTGTTTGTAACAGGGGGATGCAAGGGAAACTGCTGTCGGGCTGTGCGGCTGCACATTGCCGAGCCCTTCCACGATGCCACAGATGAGAGCTGGTGTTTCTGCCCTGTCCAGAATGAATTCTTCCTGGCCCCTCCCATGAAGAGTCCACGGACCATGCACACATCCGTCACAGCCTTAAATCGGGTCTACGTCATCGGTGGGAAGACCAGAGGGGCCAGGAAAATCCGAAGCCTGCTGGACGTGGAGTTCTACAACCCCCTGACCAAAGAATGGCAATCGGTGAGTCCCCTGCCCAGAGGGATCTACTATCCAGAAGCCAGTGCCTGTAACAACGTAATTTACACACTGGGGTCCGAAGTGGAAATAGCTGACATCTTTAACCCCTCCCTGGACTGTTTCTTCAGGTACGACGCCCAGACAGACCAGTGGTCTGAACTGGTTGCGGAGTTCGGTCAGTTCTTTCATGCTACTTTAGTCAAAGCCGTGCCAGTGAACAACACCCTGTACATCTGTGACTTATCCACTTACAAGGTGTACAGCTTCTGCCCAGAGACATGTGTGTGGAAGGGGGAGGGCTCTTTCGAGTGTGCTGGCTTCAATGCAGGAGCCATTGGGATTGCAGACAAGATCTACATCCTGGGAGGGGACTACGCTCCAGATGAGATCACAGACGAAGTGCAGGTGTACCACAGTAACAGGTCAGAGTGGGAGGAGGTCTCTCCTATGCCCAGAGCTTTAACAGAGTTTCACTGCCAGGTGATGCGATTTAACCGATACAGAGACCCGTGGAAATCAGATTCATGA

Function

GO: NA

KEGG:

id description
K10471 KBTBD3; kelch repeat and BTB domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016372 True 1983 mRNA 0.54 3 17528571 17532364

Neighbor

gene id symbol gene type direction distance location
AMCG00016373 elmod1,LOC106603718 coding upstream 503 17514811 ~ 17528068 (+)
AMCG00016371 NA coding upstream 14577 17506464 ~ 17513994 (+)
AMCG00016365 NA coding upstream 62582 17462090 ~ 17465989 (+)
AMCG00016370 NA coding upstream 88787 17439311 ~ 17439784 (+)
AMCG00016362 NA coding upstream 151255 17355232 ~ 17377316 (+)
AMCG00016378 NA coding downstream 5723 17538087 ~ 17559799 (+)
AMCG00016380 NA coding downstream 71359 17603723 ~ 17611160 (+)
AMCG00016377 gucy1a2,LOC107706059,LOC107669873 coding downstream 91774 17624138 ~ 17638420 (+)
AMCG00016386 NA coding downstream 154492 17686856 ~ 17691260 (+)
AMCG00016387 pdgfd coding downstream 343080 17875444 ~ 17887736 (+)
G13021 NA non-coding upstream 381573 17143610 ~ 17146998 (+)
G13019 NA non-coding upstream 395041 17133314 ~ 17133530 (+)
G12966 NA non-coding upstream 651669 16876345 ~ 16876902 (+)
G12929 ppme1,LOC107715282 non-coding upstream 712240 16815577 ~ 16816331 (+)
G12907 NA non-coding upstream 853382 16674893 ~ 16675189 (+)
G13174 NA non-coding downstream 126393 17658757 ~ 17680909 (+)
G13266 NA non-coding downstream 726904 18259268 ~ 18262343 (+)
G13267 NA non-coding downstream 732838 18265202 ~ 18265406 (+)
G13270 NA non-coding downstream 737669 18270033 ~ 18274439 (+)
G13273 grm5,LOC102779205,LOC106613232,LOC106581415 non-coding downstream 755676 18288040 ~ 18288261 (+)
G13012 NA other upstream 406639 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 1042568 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 2745036 14745316 ~ 14783535 (+)
G12587 NA other upstream 3089965 14437771 ~ 14438606 (+)
G12351 NA other upstream 3891570 13635442 ~ 13637001 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 30054 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 886653 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 2342692 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 4249742 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 6333903 23866267 ~ 23882946 (+)

Expression


Co-expression Network