AMCG00016378


Basic Information

Item Value
gene id AMCG00016378
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17538087 ~ 17559799 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016378
ACAGAAGATTCACATATGTTTTTACAACATCTTTGCTTGTAAATAAGTCAGGTCTATGTCATGCTTCGTAACACCCGACTCTCAGAGCTTTATAAACAGGATCACCATTGCAGTGCCTTTTATAATGTAGTGGTATTGAAAGCCTTGTACAAGAAAAGATTTTTAGAAAATACAGAGCAAATTTATGCCATAGAGAGATGTGCCAAGCAGTTCACAGATGCTTACATGGTAGCAGTAAAGACAAAATAGGAGGTATGACTTTCAGAGGTTAAAGAACACAagatcctttttctttcttttttttgtggctGTCAGCATGATTGTAATAATTGTTTTGCTCTAAAAGGTGGGATGTATAGAAAGTCTCATTTTAGGGTTACAGTAGTGAATACAAGTGCTCATGCCATAGCTGTTTTAGCCCTACTGTCAGAGGCCACCTGCTCTAAGCAAACAGTGTTATTCAGCTCTACGTTTCTCCATTACTGGATCTAAGTGGTGCCTCTGGAGGGAGATCCCAGTTTCCATGGGACAGGCCTCACTCCTGGTAGGATTTGACAAGTAGCCACATGAGCAGCACTGTGATTAAAACGATCATGAAGTTTAGGAAGAGCTCTTGTGCGGAGCGATCCATTCTGCTCTGGACTCTGGGAGAGGGCTGGATTGGAGGACTAAAGGAGACCTTGTCAGCAGGCTCAACCGTGGCACACTGGAGACACGCTCGATTGGAAACACCACGCCCCCTCTGTGTCCCAAATGGAAATGCTGGCTGGAAACGTGGACAGATGTATAGTTAGTACTCTGAGGTACCTCTGAGGGTCACAGTCCTGCAGGCAGGTTTCTTATCGTCCAGGTCCATCTGGGCTGGGAGTGACTGAGTCTCCTCTCGATTTCTGTCCTCTCGTGCCAAGTGATGCAAGCACGGGGGTAGGGTGACCTGACCTCATCAGCACAGGAGACTGGTCTTTTGTCACATTGTGATAACGCCTGCTCTGCTTGACGCTCTCGCTGCATTGCAAGCTGGGAGTCCCTCTCTGAAGATGATGTGCTCAGTGTTGTGCTTTTAGAGACTTGAGTGAAGGCAACAAAGCCTGGAAAGCCTGGCAGAAGGATTTCTTGAGGGAACGGCTCGGGTTGGCACATGGAATCAGGGCTAGTGCTTCCCCCGGCCGCCTACACGGCTGCTCCTGCGCTAGGAACCAATTGCTCGTCGGCCCGTTTCAGTCAGTGCTCAGTTATAGGTGGCACCATGGACGCCCGCCGGGAAGAAAACGTGAACGTACAGAAAATGAGTAAAGAGGAGAAGAaacgtttaaaaaaacaaattaaagcgAGTCACACGTTACTAAAGCACGAAGGCATTCATACGGTGTCGATGCCAACAAAGAGCTTGGTGGTGGCGAACGGAGGCCTGGGCAACGGGGTGAGGAGGGAGCAGCTCCTGGAGGCGCTCCGGCAGTGTGGGTCCCCGGAGGCTCTGCTCACGCCTCCCGACAAACCCTACGCGTTTGTGACTTTCCAGTCCACGGAGGAGGCCCGGCTGGCGCTCGTGGCGCTCAGTGGGAGCCAGATCCACACAGAGGAGCAGGTGGTCACCTTGTATTTGAACTTTGTGGAGAGAGTGGGCAGTGAGGTCCAGACCCCGCAGGAGCTGCCTCCTGGTCTGACCATCTTGGAGGAGTTTGTGTCGCCCGATGATGAGCTCAGACTCCTGGAGGCCATCGATTGGAGTTCCCAGAGCGACGGAGACGGCAtgcagaAGGCTCTAAAGCACAGGAAAGTGAAGCACTATGGGTACGAGTTTCGGTATGACAATAACAATGTGGACAAAGAAAAACCTTTATCTGAAGGCATCCCTCAGGTCTGTGATGGAGTGCTGGAGAGATGCCTGAAAGAGAATCTCATTAAAGTCAAACCCGATCAGCtcacaatcaatcaatatcaACCTGGACAAGGTATCCCGCCCCACGTCGACACCCACTCTCCCTTTGAGGATACAATCGTCTCCCTCAGTCTGGGATCTAAGGTGGTGATGGATTTTAAGCATCCAGACGGGCGCTCCGTCGCTGTGGTGCTGCCTGGCAGGAGTCTGCTGGTGATGACAGGGGAGAGCCGTTACCTGTGGACGCAtggAATAACTCCCAGGAAGTTTGATGTGGTTCCTGCTTGCGACAGTAACCGGCCCGGCCCTGTGACCAGTGACCTCAGGGACTTGACGCTAAACAAACGGGGGATGAGAACATCCTTCACCTTCAGGAAAGTGAGGAGGAGGCCGTGTGACTGTGCGTTCCCTTCAGCCTGCGACAGTCAAGGCCCTCCCCAGCAGTCCAGCGGCCCGTCTGCCCCTCAGAGCGACAGCGACGCCTCCTGCCTGGAGAGAGAGTTTGTGCACGAGGTGTACGAGCAGATCGCTGGGCATTTCAGCAGCACCAGGCACTCCCCCTGGCCCAGGGTGCTGGACTTCCTGCGCTCTCTCCCCACATGGGCCGTGCTGGCGGACGTGGGCTGTGGGAATGGGAAGTACCTGGGCTTAAGAACGGATCTATTCACAGTAGGATGTGACCGCAGCAGGAGCCTGGTGGACATCTGCGGACAGAGACACTTCCAGGCCTTGGTATCCGATGCCCTTGCAGTGCCTCTACGCAGCGGTGTCTGCGACGCCTGCCTCTCCATCGCTGTCATTCACCACTTCTCCACTCAGGAGAGAAGACTGGCTGCCATTAATGAACTTGTGAGGCTCCTGAGGCCTGGGGGAAGAGCTCTCATTTATGTGTGGGCGATGGAGCAGGAGTATAACAAGCAGAAGTCCAAGTATTTGAAAGAGAAGAAAGTGAAACAAGAGGAGGGTTCTGCGCCAGGCAACCTCCAGAACTCGGAGGTATCGGACcaggtgcatgctgggaaggCAGATGAAGACTGTGGATTCTTCACTGAGAAGAATCGGTCAACATTGAGCGTTCACAGGAACAGGACTGCGTTCCACTCGCAGGACCTGCTGGTTCCCTGGCATCTCAAAGGGGGTTCCCAGCAGAGCAAAGGTGTGGGGAAATCATCGGAGTCACCAGCTGGCAGCAAGGCCTCTGAGTCCAGCCCTGTCTTTCACCGCTATTACCATGTTTTCTGTGAAGGGGAGCTGGAGAACTTGTGTCAAAAAGCTGAAAACATTACAGTGCGGAGTAGCTACTACGATCAAGGGAACTGGTGTGTCATTTTAGAAAAGAAACTTGGAAtgattttttaaagcagaaatgtcaaataaaattgtgatttgATGATGTCTGTGATCAATTTGTgcaatactttgttttat

Function

GO: NA

KEGG:

id description
K10770 ALKBH8, TRM9; alkylated DNA repair protein alkB homolog 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016378 True 3307 mRNA 0.52 14 17538087 17559799

Neighbor

gene id symbol gene type direction distance location
AMCG00016372 NA coding upstream 5723 17528571 ~ 17532364 (+)
AMCG00016373 elmod1,LOC106603718 coding upstream 10019 17514811 ~ 17528068 (+)
AMCG00016371 NA coding upstream 24093 17506464 ~ 17513994 (+)
AMCG00016365 NA coding upstream 72098 17462090 ~ 17465989 (+)
AMCG00016370 NA coding upstream 98303 17439311 ~ 17439784 (+)
AMCG00016380 NA coding downstream 43924 17603723 ~ 17611160 (+)
AMCG00016377 gucy1a2,LOC107706059,LOC107669873 coding downstream 64339 17624138 ~ 17638420 (+)
AMCG00016386 NA coding downstream 127057 17686856 ~ 17691260 (+)
AMCG00016387 pdgfd coding downstream 315645 17875444 ~ 17887736 (+)
AMCG00016388 NA coding downstream 522123 18081922 ~ 18085103 (+)
G13021 NA non-coding upstream 391089 17143610 ~ 17146998 (+)
G13019 NA non-coding upstream 404557 17133314 ~ 17133530 (+)
G12966 NA non-coding upstream 661185 16876345 ~ 16876902 (+)
G12929 ppme1,LOC107715282 non-coding upstream 721756 16815577 ~ 16816331 (+)
G12907 NA non-coding upstream 862898 16674893 ~ 16675189 (+)
G13174 NA non-coding downstream 98958 17658757 ~ 17680909 (+)
G13266 NA non-coding downstream 699469 18259268 ~ 18262343 (+)
G13267 NA non-coding downstream 705403 18265202 ~ 18265406 (+)
G13270 NA non-coding downstream 710234 18270033 ~ 18274439 (+)
G13273 grm5,LOC102779205,LOC106613232,LOC106581415 non-coding downstream 728241 18288040 ~ 18288261 (+)
G13012 NA other upstream 416155 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 1052084 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 2754552 14745316 ~ 14783535 (+)
G12587 NA other upstream 3099481 14437771 ~ 14438606 (+)
G12351 NA other upstream 3901086 13635442 ~ 13637001 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 2619 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 859218 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 2315257 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 4222307 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 6306468 23866267 ~ 23882946 (+)

Expression


Co-expression Network