AMCG00016379 (cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872)


Basic Information

Item Value
gene id AMCG00016379
gene name cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17562418 ~ 17599581 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016379
TTAGCAATTTAGTTTCCGGCAGAGACATGGCGGCGTACGgaggaagttttgaaagtgtgAACAGCATCGATGAGAAGAAGGAGTTTAAGCGTAAAGCCAGGGAGGAGGTTCTGCGGAAGGCTAAAGAACAGTATGAGGAGGATGAGAGACGCAAGGAGCTCAAGCGGGCAAGAGGCGAGGACAAGTGGATGCTCCCGGAAGTGGACATGAGGCTCCAGCAACTAGACGAGGAGCATTCAGGCACgaccaagaagaagaaagagaagaagtCAAAAAAgagtaaaaaggaaaagaagaaaaaggagaagaaggagaaaaagaaggCCCAGGCTAACAACTCCAGTGACAGCTCTGCAgATTCGGAAGGTGATTGGGTAGAGGCCCCATCTGTTGCCAAACCACAGAAAACTGACAAATCATGGAAGATCCCAAAAGAGACACAAAATCCAGAAGACAACCGTCCGAGAGACGAGTGGATGACTTTTGATTTCTTGTCTATGAAAACCGTGTCGACAGCTGAGCTTCGGGCTGATAAGGAAAAGCAGAAGGAAGCAGAGAGAGACCGAGTGCAAGCAGTTGAACAGGCTGGACTGCATAAAAGAGAGCTGAACCCTTTCTGGAAGAATGGAGGGACAGGACTTCCTACAGAAGACAACAGTGTAGCTGCTGTTAAAAAAGCTGGAGTCATTAATGATGGAGGTCTGAGCTGGCTCAGGAAGTCTTACCAGCGCATGCAGGAGCAGGCCGAGCGAGAGAACCGCAGCTTGGAGGATGTGGTGTCCGAGAGATATGGGTCTATGGAACAGTTCCAGAAGAGGCTGGACGACGCAACCTTTCCACACAGGAGAAGAGACCGGGACATGGGGATGGAGCGGTGGAGAAAATCAGGCCCGCAGTCTTCACAGGAAGACCGTTCGTCAGCGGGCAGGTTCAGTCGTGATAAAGACGGACACCCCCACCGAGGAGACAGTGGGGGGCCCAGAGACTGGCACAGGGATAGAGCCTGGCACTTGCAGGGGGACCGGGAGCACGTCAAGCATGAGGATCACCGAATGGAGGGACAAGGTAGACGGTCTAGAGAAGAGTCTCAATCCAAACGAGAGAGCCCTCGGCTGGTGGGAAGACGTGACGAGTCCTCCTCCGCACATAGTGCCCTCAAGACCAGGTTCCTGAAGCCCACGGACGATGTGCCGGCTGGGAACTGGAGTCAGAAACCAGGCCTCTCTTCATCTCCAGCCCCCGCCAGGAACTCCATGTCATTCCGCAAGCCTGACTGTGATGACGACTGTGACGGCACCAGTCTTTTGTCTTGGAAAGAGAGCAGCTCAGATGCGCACACCAGAGAGATGGAGGTGGAAAGGGCTCCGAGAACGTCAGCATCGTCTGAGAGGGCTACTGGAAAAGACTGGAGAGACCGAGCAGAGGAGAGACCTGGAAATGCCACAGCGCAGAGGCAGCAGGCCGAACCCAGGCCGGTGCCGCACGAGTCTCCAGACGGTGTTGGCAAGGCCTCCTCTTCCAGAAGTGCTGCTgcgagggaggaagaggaggaggaggaggaggaagaggaggaggtgcCTGTCCTCACAGATGAGGAGATGAACAAGCTTGGAGCGAAGCTGGTGAAAGCAGAGCTGATGGGAAACATGGATATGGTTAACAAGCTGAAGGCCCAACTGGAGGCGGCTCGCAAGGCAAAGGACGGACAAGCTCAAAGGGTCTCTTCTGCGTCCATGTCGAGAAAGTCTGAGACCAAGGCTCCAGGTGCAGGGGAGCCGAACGAGGAGGTGGTTCTGTTCCGGACAGACCATTCTGGGCGAGCCTGGCCCGTCAACGCCTCATCTGAATCACTGCAGCCCAGAGGGGGACGGCGAAAGAAACAGACGATTGAGACCCATCGTGAGGGGGAGAGGGTGCGTTACTTCCAGGATGACGACAATGTGGACCTGAAGGAGAtggtgaagagagagaagatggGCACGGCCGAGGACCAGAACATGCTGTATTCCAGAATGGCATCAAAGCTGATGGGGAAGACGGACGGGGACTATCACACCCTGGACGACATGTTTGTGTCTAGCGCGGCTCAGAGGGAGCACTCCGGTCATGACGAGGAGAGGCAGCGGCTGCGGGCCATCCAGGAGCACCGGCGGCTGGCGGGGAGCATGGAGAAGTGTCCGTACTGCTTCGACAGCCCCGAGCTCTCCAAGCACCTCATCATCGCCATCGGCACCAAGGTGTATGTTTGCCTTCCGAATTGTCAATCTTTGGCAGAGGGGCACTGCTTAATTGTGCCCCTGCAGCACCACTCAGCAGCCACTGCCCTGGACGAGGACATCTGGACAGAGATTCAGATGTTCCGCAAGGCCTTGGTGAAGATGTTTGAAGATCAAGACCAAGACTGCGTGTTCCTGGAGACGCACATGAACCTCAAACGCCGCCATCACATGATCTATGAATGCGTTCCTCTGCCCAGAGAGCTGGGGGACATGGCTCCCATCTACTTCAAGAAAGCCATAATGGAGTCAGACGAGGAGTGGTCCATGAACAAGAAGCTGGTTGACCTCTCTTCTAAGGATATCCGACGAGCAGAAATCATCGGAGGCATGCTTGATCTGGAGCCGAGACGCTGGCGAAAACCGATCCGGGAGAATTTTGATGACCAGCGGAAGAAAGTGCTGCAGTTTTCTCAGTGGTGGAAGCCGTTTGACTGCACCAGGAATGACAGTTAACGTGTTTGAGTCCAGCAGATTGCAgattctcacctctctctcatGATCTCTGTAGTAATCTCCAGTTTAGGAGTTACTTACACTGTACCATAAACCTCCACCTTAAAGGACAGACTAAGATGAACATTGTTTAATGAATGACCTTGATATTAGACTGCATGGGAATAATACACAGGGAACAGTAAAATACGTTCTGATGTATTTTGACTTATTTTGTTACCTTGATGCAGAATTAATATTCCTAAACGTATATTAAGTTAAATGACATTTAAgccaaattaaactgaaacaaaaga
>TU16296
CCTAAAGAGGCGAGGTGTCTGACCGTACTGACTGtcctgcctccctcccttcaCACACTTGGAGCCGTCACGGTGTTTGGTTAGGTTCCCAAAGGACTGCCTTATTTCTCTGTGGATTTCGGACTTCAAGGAGGCTTTGCTCACGTCATTGAGAATGAACACAAGTTCCCTCATTATTTTGGCAAGGAAATCATCGGAGGCATGCTTGATCTGGAGCCGAGACGCTGGCGAAAACCGATCCGGGAGAATTTTGATGACCAGCGGAAGAAAGTGCTGCAGTTTTCTCAGTGGTGGAAGCCGTTTGACTGCACCAGGAATGACAGTTAACGTGTTTGAGTCCAGCAGATTGCAgattctcacctctctctcatGATCTCTGTAGTAATCTCCAGTTTAGGAGTTACTTACACTGTACCATAAACCTCCACCTTAAAGGACAGACTAAGATGAACATTGTTTAATGAATGACCTTGATATTAGACTGCATGGGAATAATACACAGGGAACAGTAAAATACGTTCTGATGTATTTTGACTTATTTTGTTACCTTGATGCAGAATTAATATTCCTAAACGTATATTAAGTTAAATGACATTTAAgccaaattaaactgaaacaaaagacT

Function

symbol description
cwf19l2 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of post-mRNA release spliceosomal complex. Orthologous to human CWF19L2 (CWF19 like cell cycle control factor 2).

GO: NA

KEGG:

id description
K24940 CWF19L2; CWF19-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016379 True 3028 mRNA 0.53 17 17562418 17599579
TU16296 False 625 lncRNA 0.57 3 17597350 17599581

Neighbor

gene id symbol gene type direction distance location
AMCG00016378 NA coding upstream 2619 17538087 ~ 17559799 (+)
AMCG00016372 NA coding upstream 30054 17528571 ~ 17532364 (+)
AMCG00016373 elmod1,LOC106603718 coding upstream 34350 17514811 ~ 17528068 (+)
AMCG00016371 NA coding upstream 48424 17506464 ~ 17513994 (+)
AMCG00016365 NA coding upstream 96429 17462090 ~ 17465989 (+)
AMCG00016380 NA coding downstream 4142 17603723 ~ 17611160 (+)
AMCG00016377 gucy1a2,LOC107706059,LOC107669873 coding downstream 24557 17624138 ~ 17638420 (+)
AMCG00016386 NA coding downstream 87275 17686856 ~ 17691260 (+)
AMCG00016387 pdgfd coding downstream 275863 17875444 ~ 17887736 (+)
AMCG00016388 NA coding downstream 482341 18081922 ~ 18085103 (+)
G13021 NA non-coding upstream 415420 17143610 ~ 17146998 (+)
G13019 NA non-coding upstream 428888 17133314 ~ 17133530 (+)
G12966 NA non-coding upstream 685516 16876345 ~ 16876902 (+)
G12929 ppme1,LOC107715282 non-coding upstream 746087 16815577 ~ 16816331 (+)
G12907 NA non-coding upstream 887229 16674893 ~ 16675189 (+)
G13174 NA non-coding downstream 59176 17658757 ~ 17680909 (+)
G13266 NA non-coding downstream 659687 18259268 ~ 18262343 (+)
G13267 NA non-coding downstream 665621 18265202 ~ 18265406 (+)
G13270 NA non-coding downstream 670452 18270033 ~ 18274439 (+)
G13273 grm5,LOC102779205,LOC106613232,LOC106581415 non-coding downstream 688459 18288040 ~ 18288261 (+)
G13012 NA other upstream 440486 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 1076415 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 2778883 14745316 ~ 14783535 (+)
G12587 NA other upstream 3123812 14437771 ~ 14438606 (+)
G12351 NA other upstream 3925417 13635442 ~ 13637001 (+)
AMCG00016407 NA other downstream 819436 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 2275475 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 4182525 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 6266686 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 6338470 23938051 ~ 23945024 (+)

Expression


Co-expression Network