AMCG00016380


Basic Information

Item Value
gene id AMCG00016380
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17603723 ~ 17611160 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016380
ATGTCTTCGAGGAAGATCTCATCCGAATCGTTCAGCTCAATGGGATCCGACTACCTGGAGAGCCCCGAGGACGGAGAGTGCCCCTTCTCCCGGGGCTGCTGGAATGGCAAGAGCCCCCCAGGGTCCCTGTCCTGCCCGTTTGATGGCAAGAGCCCCCCGGGGTCCCTGTCCTGCCCGTTTGAAGAGGTCGGGGTGAGACGGGCGCCCAGGCAGAGACGAGTCAACCTGGACTCCCTGGGAGAGAGCCTGAGGAGGCTGACATCCCCCACGACACAGACCATACAGCAGGCTCTGCAGAGAACCTTGCAGATCTACAAGCACCAAGTCATCAGGTGCCACGATGACGAAAAAGATGTTCATAGCATTTCCAGCAGATGCCCCTATTTGGATCACACAGGCACGGACAAAGAGGTAGAAGATATCTCCACAATCCTCCAGTGCACGGCCACACTGCTGGGGGTGAAGTTTGCGGAGCTGCGGGAGACCTTTGGGGAGGAGTTCTTTGGCCTGTGCTTCGAGGAGAATGAGAGGGTCCTCAGAGCCGTGGGCAGTAACCTGCAGGACTTCTTCAACGGGTTTGACGCCCTGCTGGAGCACATACGGACTTCCTGTGGTAAGAGGGTGTCCGCCGAGTCGCCCTCTTTTCTATGCAAAGACACGACGGAGGGGGGCTCGCTGCTGCTGCACTACTTCCACCCCTCGGGCACCGTGGGCCTGGCCATGCCCGGGCTCATCAAGGCCGCGGCCAGGAGGATATACTGCATGGAGGTGCGGGTGGAGGAGGTGGACGGCTCCTCGGACAAGCTGGCTTTGGACGGGACGCCCACCGGCAACTCCAACTGCCTCACGTTCCTCATCAAAGTGTCCCAGCAGCCAGGGAGCCCCAAACCTCTGCCCCTGAAGCTGTCCTGCTCCCCCCCGGACCTCCGGATTGGCCTGAGCACTTTCTGCCGAGCCTTTCCTTTCCACCTGGTGTTCGACCCCAGCATGGCCGTCCTGCAGCTGGGTGAAGGCCTCCGGAAGCAGGTGAAGTGTGAGGTGCACAGGACTTTGAGCTTCCGGGATTGCTTCGAGATTGTCTCCCCAAAAATCGCCTGCACTTTTCAGGGGATCCTCTTGAGACTGTCCTCGCCCTTCGTGATCAGGACACGGCCCAACACCCCCGGACTGGGCACCAAGGAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016380 True 1185 mRNA 0.60 4 17603723 17611160

Neighbor

gene id symbol gene type direction distance location
AMCG00016378 NA coding upstream 43924 17538087 ~ 17559799 (+)
AMCG00016372 NA coding upstream 71359 17528571 ~ 17532364 (+)
AMCG00016373 elmod1,LOC106603718 coding upstream 75655 17514811 ~ 17528068 (+)
AMCG00016371 NA coding upstream 89729 17506464 ~ 17513994 (+)
AMCG00016365 NA coding upstream 137734 17462090 ~ 17465989 (+)
AMCG00016377 gucy1a2,LOC107706059,LOC107669873 coding downstream 12978 17624138 ~ 17638420 (+)
AMCG00016386 NA coding downstream 75696 17686856 ~ 17691260 (+)
AMCG00016387 pdgfd coding downstream 264284 17875444 ~ 17887736 (+)
AMCG00016388 NA coding downstream 470762 18081922 ~ 18085103 (+)
AMCG00016394 tmem135,LOC107701128 coding downstream 486851 18098011 ~ 18100803 (+)
G13021 NA non-coding upstream 456725 17143610 ~ 17146998 (+)
G13019 NA non-coding upstream 470193 17133314 ~ 17133530 (+)
G12966 NA non-coding upstream 726821 16876345 ~ 16876902 (+)
G12929 ppme1,LOC107715282 non-coding upstream 787392 16815577 ~ 16816331 (+)
G12907 NA non-coding upstream 928534 16674893 ~ 16675189 (+)
G13174 NA non-coding downstream 47597 17658757 ~ 17680909 (+)
G13266 NA non-coding downstream 648108 18259268 ~ 18262343 (+)
G13267 NA non-coding downstream 654042 18265202 ~ 18265406 (+)
G13270 NA non-coding downstream 658873 18270033 ~ 18274439 (+)
G13273 grm5,LOC102779205,LOC106613232,LOC106581415 non-coding downstream 676880 18288040 ~ 18288261 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 4142 17562418 ~ 17599581 (+)
G13012 NA other upstream 481791 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 1117720 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 2820188 14745316 ~ 14783535 (+)
G12587 NA other upstream 3165117 14437771 ~ 14438606 (+)
AMCG00016407 NA other downstream 807857 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 2263896 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 4170946 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 6255107 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 6326891 23938051 ~ 23945024 (+)

Expression


Co-expression Network