AMCG00016386


Basic Information

Item Value
gene id AMCG00016386
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17686856 ~ 17691260 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016386
CCTGCCTGGAACCGGAAGCCCTTGCACGGAGCGATGTGACTGATGATGATGTATCGGAGAAATTCCTTCTACATAACAGTCCGATACCTTGAGTATCAGAGAGAGTGGATTTGCGAGTAGGCGTAGCTTCCCTTCATACCTTAGGCCTACAGCTCTCCCCGCCTGCCTGAGCCCTGCGCTCGCGCTCCTAACCCCAGTCACCACAGGCTAGGTTGCTTTTAAAACGCCAAGCTGGATTTCCTTCAGATGAAGCAGCTGAAAcgcaaaagaaaaagcaactaTAGCGTGAAGGAAACGCAGACCCTAATCAGGGAGATCCGGAAACGCAAGGACATACTCTTCTccaaacagcagaacacagccATCAATGAGCTGAAGAGGAGGGCGTGGGATGAGGTGGCCGATTGCGTGAATGCCCTTGGAGAAGGAGAGCTGAGGACCGCTGTGGAAGTGAAGAGACGATACCTGGACTGGAGGGCGTTGATGAAAAGGAAGCAGATTAGGGCCGAACTATCTGACATCAAAAACGAGTATAATCCGTCATCTCCAGACATCGATAACTCGCTCAGTGGGGACCAGAGTGTAGACTTGAGTGGGTTTCCAAAGGAATCCAACTGCGACTGGCAAGACCTCTCTGATCTGGGAGAGCCCAGCAGCCACAATTCGTCAGGAATCAAGATGGAAGATGATGACCCCAATAATTACAGGCTCGAGagcggagagggagagggagagggcgaCGGAGAAGAGGAAGACGAGGATGACTGCTTCCCTTCCATCCTGCCGGAAGTGGACAGGGAAGGCAGGGTGCCGGAGGTGTTTGCTCACATCGATGAGTTCGGCATGCTGAGTGCCACCAAGGCCACCTCCAGGGAACCGGGCGGGGGCGGAGGAGGAGGCGCGGACGGCACGGGCCTCCTGATCGCGCTGGAGAAGCAGCGGTTGGACCTGGAGAAGCACCGCCTCAACGTGGAGACGGAGCGGCTGCAGGTGGAGAAGGAGCGGCTGCAGATCGAGAAGGACAAGCTGCGGCGCGTCGACATCGAGCACGAGCGGCTGCAGATGGAGAAGGAGCGGCTGCAGATCGAGAGGGAGCGGCTGCGGCTGCTCATGTTCCAGGCCGAGCGGCCCACCATGGACTGCGAGCTGTCGCAGAAGGACAGGAAGCCCTGGCAGCCGGTGGACCTGGAGTCGGAGCGCCTGAAGCTGGAGAAGGAGCGCCTGCAGCTGGAGAAGGAGCGCCTGCAGTTCTTCAAGTTCGAGTCGGGGCGGCTGCAGATCGAGAAGGAGCGGTTTCAGGTGGAGAAGGAGAGGCTGCAGCTCCACAAGGATGGACAGCAGATGGCTCTTCACCAGCCACACTAGACCTACTCGGATCGCTCGCTAaagttgtgctttttaaaaccgTTTTCTGAATTTTTACTGGCCGATTTCTTAAGTTGTGCTGTGCAATGACTTTGAAAAAGggacttgtttttttcctaacGGATGTGTTCAGTATAACTGTGTTTAGGAGTTCATGCTTTGTGTGACACTttcctcatttgtttttctttttaggaaCACTAGAGATGCAGTATATTATCAGAATATTCCATgaataaatgcaataataaacatCAGTGTTGACCGGTATTCAGTTCCCAAAACGATCAACAGAAAAATCGATTGACAGTAATTGTGTCCATAGTCTCCCCATTTCACGAGAAGTTGAAGTAAagaaatacaagtattttataGTCATTAGTGACTGTGAATGTAATGTTGTATCTGAGGAGTTTCTTTTCAGAAACCCTCAGTACTGTATGTGATCTATAGGAGAATCGTTGCCTAATGTATGTATCAAGCACAACTCGATggtgggaagaaaaaaaatgctcgTGAAGCAAGACCTCTTAGTATTGGTGTGAATAAAAGCgtaaacgttttattttttatctgcaCTGTTACATGATGTTCAgtcctttcatttttttggaCATTTGTAGAGTCACAGAGAACATCCCTTgttacaaaaaagtatttgaaggTTAAAAACTTAATGTGCTTGTACCTCCATGCCTACTTCTTTCATcacaaagaataaaagtaaCGTGCTGAGTTTGACAATCTGATGTGTTATAAACCGAAGGGGTTAACTTTCAGTTTGACCGGAGTCAGTCTCTGTAAGActtgtttttagtttgaaatcaaataaatcttCAGAACCAGTGTTATAGCACTGCAATGATATTACACGGTTCACTGAGACGATTGTCTTTGACCACATGGTGCAACTCCTGACTGCTTAGAAAAAGACCATAACACTTCTTATAGCAGTACTCATTCTTTTTATGACTTTGTACAAGAAAAGACTGGGCTGTTGTTGCTCAGTTGGCCTAGTTCATCAAATACTTTCAAATAAGATCGAGTTTCTGAtgtataagaaaaacaaatatcattCCACAACACTGCAGCTGGTTAATAACTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016386 True 2472 mRNA 0.48 3 17686856 17691260

Neighbor

gene id symbol gene type direction distance location
AMCG00016377 gucy1a2,LOC107706059,LOC107669873 coding upstream 48436 17624138 ~ 17638420 (+)
AMCG00016380 NA coding upstream 75696 17603723 ~ 17611160 (+)
AMCG00016378 NA coding upstream 127057 17538087 ~ 17559799 (+)
AMCG00016372 NA coding upstream 154492 17528571 ~ 17532364 (+)
AMCG00016373 elmod1,LOC106603718 coding upstream 158788 17514811 ~ 17528068 (+)
AMCG00016387 pdgfd coding downstream 184184 17875444 ~ 17887736 (+)
AMCG00016388 NA coding downstream 390662 18081922 ~ 18085103 (+)
AMCG00016394 tmem135,LOC107701128 coding downstream 406751 18098011 ~ 18100803 (+)
AMCG00016393 tmem135,LOC107718730,LOC107701128,LOC107693910 coding downstream 466447 18157707 ~ 18165129 (+)
AMCG00016397 NA coding downstream 673478 18364738 ~ 18370387 (+)
G13174 NA non-coding upstream 5947 17658757 ~ 17680909 (+)
G13021 NA non-coding upstream 539858 17143610 ~ 17146998 (+)
G13019 NA non-coding upstream 553326 17133314 ~ 17133530 (+)
G12966 NA non-coding upstream 809954 16876345 ~ 16876902 (+)
G12929 ppme1,LOC107715282 non-coding upstream 870525 16815577 ~ 16816331 (+)
G13266 NA non-coding downstream 568008 18259268 ~ 18262343 (+)
G13267 NA non-coding downstream 573942 18265202 ~ 18265406 (+)
G13270 NA non-coding downstream 578773 18270033 ~ 18274439 (+)
G13273 grm5,LOC102779205,LOC106613232,LOC106581415 non-coding downstream 596780 18288040 ~ 18288261 (+)
G13274 NA non-coding downstream 619268 18310528 ~ 18315356 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 87275 17562418 ~ 17599581 (+)
G13012 NA other upstream 564924 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 1200853 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 2903321 14745316 ~ 14783535 (+)
G12587 NA other upstream 3248250 14437771 ~ 14438606 (+)
AMCG00016407 NA other downstream 727757 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 2183796 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 4090846 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 6175007 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 6246791 23938051 ~ 23945024 (+)

Expression


Co-expression Network