AMCG00016388


Basic Information

Item Value
gene id AMCG00016388
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18081922 ~ 18085103 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016388
ATGTTTTTCTGTAGATGGGGATTTCACGTAAGgaGTACACTCATCTACCTGTATACGCTGTTGCACTCAGTGAGTGCAGGTAACTACAGCCAACCCAAAGTGGTCGTGGTGAGGAACAACAGTGGGAGAAGCTCAGACACTAGCTGCACAGTTAAGATTCACTGTTTCTCATCAGGTGGCTACCCCCAAAAAATGGTTAAGTGGAATTTTACCAAAGAGCTGAATATATCCTTACGGATCACAGAAGTGAACAAGAGCGCCGAGCAGGATCCAGGCAATGGGCTTTTTAATATTTCCAGCACAATCTTCGTGAACAGCTCTGGAGCTTTCAACGTTAGCTGCTCTGTGGGGGAGGAGACTTCAAAAGAAATTGAAGTTTGTGTTGATAATCCAGACCCAAAGCTACCAGCAGAGTTTGACCCCACCCAAAATATTGCTTTTGGAGTGATATTAATCCTAATCAGCATTGTATTGCTCTGTCTTcttataaagaaaattaaagCAACTTCAGAGGAACATCAAGAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016388 True 528 mRNA 0.43 5 18081922 18085103

Neighbor

gene id symbol gene type direction distance location
AMCG00016387 pdgfd coding upstream 194186 17875444 ~ 17887736 (+)
AMCG00016386 NA coding upstream 390662 17686856 ~ 17691260 (+)
AMCG00016377 gucy1a2,LOC107706059,LOC107669873 coding upstream 443502 17624138 ~ 17638420 (+)
AMCG00016380 NA coding upstream 470762 17603723 ~ 17611160 (+)
AMCG00016378 NA coding upstream 522123 17538087 ~ 17559799 (+)
AMCG00016394 tmem135,LOC107701128 coding downstream 12908 18098011 ~ 18100803 (+)
AMCG00016393 tmem135,LOC107718730,LOC107701128,LOC107693910 coding downstream 72604 18157707 ~ 18165129 (+)
AMCG00016397 NA coding downstream 279635 18364738 ~ 18370387 (+)
AMCG00016411 fat3 coding downstream 543325 18628428 ~ 18635806 (+)
AMCG00016412 NA coding downstream 577899 18663002 ~ 18663364 (+)
G13174 NA non-coding upstream 401013 17658757 ~ 17680909 (+)
G13021 NA non-coding upstream 934924 17143610 ~ 17146998 (+)
G13019 NA non-coding upstream 948392 17133314 ~ 17133530 (+)
G12966 NA non-coding upstream 1205020 16876345 ~ 16876902 (+)
G12929 ppme1,LOC107715282 non-coding upstream 1265591 16815577 ~ 16816331 (+)
G13266 NA non-coding downstream 174165 18259268 ~ 18262343 (+)
G13267 NA non-coding downstream 180099 18265202 ~ 18265406 (+)
G13270 NA non-coding downstream 184930 18270033 ~ 18274439 (+)
G13273 grm5,LOC102779205,LOC106613232,LOC106581415 non-coding downstream 202937 18288040 ~ 18288261 (+)
G13274 NA non-coding downstream 225425 18310528 ~ 18315356 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 482341 17562418 ~ 17599581 (+)
G13012 NA other upstream 959990 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 1595919 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 3298387 14745316 ~ 14783535 (+)
G12587 NA other upstream 3643316 14437771 ~ 14438606 (+)
AMCG00016407 NA other downstream 333914 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 1789953 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 3697003 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 5781164 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 5852948 23938051 ~ 23945024 (+)

Expression


Co-expression Network