AMCG00016389 (dync2h1,LOC106613216,LOC108413322,LOC107566891,LOC103461033)


Basic Information

Item Value
gene id AMCG00016389
gene name dync2h1,LOC106613216,LOC108413322,LOC107566891,LOC103461033
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17985431 ~ 18004633 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016389
AATACTTTCCCATCCCTGCATCAAATGTTATGCCTGGACGATGCAGACCTTTGGCTTACATTTTCCCGCAGTTCAACCTGTGAACAAGACTTTCCACCATCCATTGCAAAGAAGATCACACCGTTTCAGCAGGTCCTGGTTGTCCAAGCAATCAGACCCGATAGACTTCAAAGTGCAATGGCATTCTTTGCATCCCAATCCCTGGGAATGAAAGAGCTCTCTCCACCACCTCTGAACCTAAAGAGACTGTATAAGGAAACCCTGGAGATTGAGCCGGTCTTGATCATAATCTCGCCCGGCGCTGATCCTTCCCAGGAGCTGCTGGAACTGGCCAGCGAGACAGTTGGCAGAGAGAACTACCACGAGGTGGCTATGGGCCAGGGCCAAGCTGACATCGCCATTCAGGCTCTCAAGGAATCTGCACGCAATGGGGAATGGCTTTGTTTAAAGAATCTGCATCTTGTTACCGCCTGGCTCCCACTCCTAGAAAAGGAATTAAATGTTCTCCAACCAAAGGCTAGCTTCCGTCTTTGGCTCACAGCTGAAACTCATCCCAAATTCACACCTATACTTCTTCAGTCCAGCCTTAAGATTACATATGAGGCGCCTCCGGGGCTGAAAAAGAACCTGATGAGAACATATGAATCGTGGTCCCCGGAGCAGATCAGTAAGAAAGGCCTCCTGCCACGAGCTCAGTCCCTCTTCTGCCTGGCTTGGTTCCATGCAGTGTGCCAGGAAAGAAGGAATTACATCCCTCAGggATGGACAAAGTTCTATGAATTTTCTCTCTCAGATCTACGAGCGGGCTTTGAAATCATTGACAGACTGTTTGATGGAACTAAGGACTTCCAGTGGGAGTTTGTCCACGGGCTGTTGGAAAATGCCATCTACGGTGGTCGGATTGACAACACATTTGATCTACGCATCCTGAGGTCCTACCTGGAGCAGTTCTTCAACTCCAGGCTGAATGCAGGGTCCCAGACACGCAGCAAGAAACTCACCTTCTCCTCCCAGATCACTCTGCCCAGCTCATGTAGCATCATG

Function

symbol description
dync2h1 Acts upstream of or within cilium assembly and intraciliary transport. Located in non-motile cilium. Is expressed in central nervous system; pronephric duct; and retina. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy 3. Orthologous to human DYNC2H1 (dynein cytoplasmic 2 heavy chain 1).

NR:

description
PREDICTED: cytoplasmic dynein 2 heavy chain 1-like

GO:

id name namespace
GO:0001539 cilium or flagellum-dependent cell motility biological_process
GO:0007018 microtubule-based movement biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0030031 cell projection assembly biological_process
GO:0030286 dynein complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016389 True 1044 mRNA 0.50 8 17985431 18004633

Neighbor

gene id symbol gene type direction distance location
AMCG00016390 dync2h1,LOC106613216,LOC106593015 coding downstream 37295 17935136 ~ 17948136 (-)
AMCG00016382 LOC107706429,LOC107681140,LOC107548160,LOC107718985 coding downstream 198336 17785858 ~ 17787095 (-)
AMCG00016383 gria4,gria4a,gria4b,LOC107756206 coding downstream 236681 17740632 ~ 17748750 (-)
AMCG00016385 gria4 coding downstream 268448 17715768 ~ 17716983 (-)
AMCG00016384 LOC107548160,LOC108279362,LOC108440167,LOC103155416 coding downstream 281046 17696929 ~ 17704385 (-)
AMCG00016391 dync2h1,LOC106613214 coding upstream 15406 18020039 ~ 18069565 (-)
AMCG00016392 fzd4,LOC107600811,LOC107551868 coding upstream 82134 18086767 ~ 18091557 (-)
AMCG00016395 rab38 coding upstream 224478 18229111 ~ 18242329 (-)
AMCG00016396 NA coding upstream 254527 18259160 ~ 18262198 (-)
AMCG00016398 grm5 coding upstream 269597 18274230 ~ 18292859 (-)
G13129 NA non-coding downstream 489084 17495923 ~ 17496347 (-)
G13126 NA non-coding downstream 491085 17493855 ~ 17494346 (-)
G13091 NA non-coding downstream 607892 17375266 ~ 17377539 (-)
G13065 clns1a,LOC102781126 non-coding downstream 698602 17284403 ~ 17286829 (-)
G13045 rps3 non-coding downstream 739101 17241944 ~ 17246330 (-)
G13254 NA non-coding upstream 158154 18162787 ~ 18165770 (-)
G13334 NA non-coding upstream 821561 18826194 ~ 18901976 (-)
G13339 NA non-coding upstream 1053772 19058405 ~ 19058673 (-)
G13341 NA non-coding upstream 1072735 19077368 ~ 19077823 (-)
G13366 NA non-coding upstream 1083591 19088224 ~ 19088632 (-)
AMCG00016376 NA other downstream 444089 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 718684 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 1115429 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 1124252 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 1510261 16470611 ~ 16475170 (-)
G13367 NA other upstream 1086606 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 2124275 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 2611876 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 2661509 20666142 ~ 20683024 (-)
G13962 NA other upstream 5450459 23455092 ~ 23455811 (-)

Expression


Co-expression Network