AMCG00016392 (fzd4,LOC107600811,LOC107551868)


Basic Information

Item Value
gene id AMCG00016392
gene name fzd4,LOC107600811,LOC107551868
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18086767 ~ 18091557 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016392
CTTTACCGAACTGGCTGCAGGGGCGACTCAGTGACCGCAGAGGCAGCGCAGTCCGTCCCGCAGCAGTCAGACCCGCATCTGCGGACTTCCCCGcacagcgcagcgcagcgcagcgcgGCATTTGCACGGAGCCTTTCTCTTGATCTTCATCCAGGACGGTTTGCACACTCAGTCCGCTTCCAGGTGTTGACCGCCGCCGTGGGGCTCCGAGGCGAGGCGAGGCGAGGCGAGGCGCGCCGGGCTGCACCGGGACTGTGGACTGGGCGGTCGGCTGCTTGACACCAGCAAGGTACCATGCGTTGGATTTCGCTCCTGGATATGGTGGTGTTTTCCTTGACCATCTTTTCCCACCCCCTGGGGTCAGCCCAGGGGTTTGGGGACGAGGAAGAAGTACAGTGTGACCCCATCCGGATTTCCATGTGCCAGGATCTGGGATACAATGTTACAAAGATGCCCAACTTGGTGGGCAACGTGCTGCAGTCGGACGCGGAGCTCCAACTGACAACTTTTACCCCTCTTATCCAATACGGGTGTTCAAGCCAGCTTAAGTTTTTTCTGTGCTCAGTCTATGTGCCCATGTGCACCGACAAGGTCAACATCCCTATCGGGCCCTGTGGCAGCATGTGCCTTTCAGTCAAGCGTAAATGTCTGCCTGTCTTGACGGAGTTTGGCTTTGTGTGGCCCGAGCCCCTCAACTGCAGCCTCTTCCCACCTCAGAACGACCAAAACCACATGTGCATGGAGGGGCCTGGAGACGAGGAGGCCCCGTACCACACCATCAAGACCTTGCAGCCCTTGGAGGAGGAATGCCATACCCGGGTGAAAAACTCTGACCAGTACATCTGGGTCAAAAGGAGTATGAACTGTGTCTTAAAGTGTGGCTATGATTCAGGTCTCTACGGAAGACCGGCCAAGGTGTTCACCGACATCTGGATGGCTGCCTGGGCCATCCTGTGCTTTGTGTCGACCACCTTCACCGTCCTCACTTTCCTCATCGACTCCTCTCGGTTCTCCTACCCGGAGCGGCCCATCATCTTTCTGAGCATGTGCTACAATATTTATAGCATTGCTTACATTGTGCGGCTGACGGTCGGGAGGGAGAGGATATCCTGTGATTTTGAGGAGGCAGCCGAGCCCGTGCTCATCCAAGAAGGGCTGAAAAACACCGGATGTGCCATCGTTTTCCTGCTCATGTACTTCTTTGGGATGGCCAGCTCCATCTGGTGGGTGATCCTGACGCTGACGTGGTTCCTGGCAGCGGGACTCAAGTGGGGGCACGAGGCCATCGAGATGCACAGTTCCTACTTTCATATTGCGGCCTGGGCCATCCCAGCCGTGAAGACCATTGTGATTTTAATCATGCGGCTAGTGGATGCCGATGACCTGACTGGCCTGTGCTACGTTGGGAACCAGCACATCGATGCCCTCACAGGGTTTGTGGTGGCGCCTTTGTTCACCTACCTGGTGATCGGGACCCTTTTCATAGCCGCCGGCTTAGTGGCTCTGTTCAAAATCCGGTCCAACCTGCAGAAGGATGGAACTAAAACGGACAAACTGGAACGGCTCATGGTCAAGATTGGCGTGTTTTCCGTGCTGTACACCGTGCCGGCCACCTGCGTCATAGCATGTTACTTCTACGAGATTTCCAATTGGAGTGATTTCAAGCACACGGCAGATCACTCCTACATGGCCGTGGAAATGTTGAAGATGTTCATGTCTCTGCTGGTAGGAATCACCTCGGGCATGTGGATCTGGTCTGCCAAGACCTTGCACACGTGGCAGAAATGCTCAAACAGGCTGGTGAGCTCTGGGAGGACAAAACGTGAGAAAAGGGCAGACGGCTGGATTAAGCCGGTAAAGGGAAATGAGACGGTGGTGTGAAGCCATGATGCCAGGGACAGCCTTTTTTGTATAGGGCTTGAAAAAGCAACCTCGTAACCTGAGTAGGTTAACTCGACATGGGTTGGCCCATTCAGTTGCTGGAAGAGGGAGACGCAGCAGAGGACTCTGAGCACAGACATAGCGCATCGTACAAGCTGCCGTAAAGAGCAGAGCAGTTGTCCATGAATGGTACCTTAACCGTAATCTTCAGTGGGTGTGATGGCTTGTGTCGCTTAACCAAAAACTGAGCTGATTTCACAGTGTGTCTTGATTTTTCCTTCATCACGTCAAAGTTAATGTAGCTGTGCATCATGCTGTGAAGGACTGGTGCAGTCCTATTTGCAAATGGCCATCAGAAGCTCGTTCAGGGTGTTTAACAGTGTATTGCTGTAACtgtaaatgcagtttatttatgtagcaGTTACAGTATTTGATATGCATTTACACAGAGTTTTTATTAGCCTGTTTTACACTGGACATTTAACAGTGTAGATGTTGTACAAAGGTATGGCATACATACACATTGAAGTGCACTATGGAAAGATTATTGTGAATCTTATTTCTACAGACTCTGGGTTTATGCCTCAGGCACAAGAAGATCTGGGTCAGTGACTGCTGCTTTATTATCTGTGGTATGTCTGAATTCTACTGCAGTATATTTACAGGTTTTATTCAATGAAATCTCCAAGAACAGGAATGGCcactttttatttcaaagaatATGAGTATAACCAGCGTTACAAGGTGTTTTTAGATTTCTGAATTCAGCCTAGTTGTGCTTTTGGCAAATGTCCATTCAACTCCccttttttaaactttgtagGATCTCCTGAATTATACCCATAGCTATTTCATATGTTTAAAGGTAGAATGTTTTACCCCCAAACTTTTTGATATAATTTATCTCTAGACCCCTCGATGGTGTCCTTGTCGTACTTTATAATGGTCGCACAATAATTTCTATTCTGGAAAAAGTTACTCCTCAGTATCTTTCTGAGCAATGTACTGACTCTATGCTGAAGGAATGTCTTCACTGGCACACTGGGTTAAAACACAAGCTGTGTATTATGTCAAACCAAAACTGCAACAGACAATGAAGGTTTTCAACCGAAACATGCGACCAAATTTAGAACTAGTAAAACTGTCCAGTAAAGAAGCCCTCTTGATGAACTTGTCAAAGCTGAATGCTGGGACACCATATCCATGTACAACACGTGTAGGGCCGTTTCCCACTTTCCCTtgaatgtacttttttatttttattttatttttatatttgtgggggagaaaaaaaacattttcatccgtTTTAAGgtgcaacagaaaaaaatgggTACTTACAACACCTAGCCAATTAAGCCAGGATAAAATGAAGtactttgaatattttttttaaacaacatggtttgttattaatgtatttttatatgtttgtgtctgtgtatgtatgtgtatttatatatacatgtatatataatctttgtaattttttaaatttaaatctgcttttgtatcagaa

Function

symbol description
fzd4 Predicted to enable Wnt-protein binding activity. Predicted to be involved in Wnt signaling pathway; negative regulation of canonical Wnt signaling pathway; and retina vasculature morphogenesis in camera-type eye. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in central nervous system; neural plate; and neurogenic placode. Human ortholog(s) of this gene implicated in exudative vitreoretinopathy 1. Orthologous to human FZD4 (frizzled class receptor 4).

NR:

description
PREDICTED: frizzled-4

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02354 FZD4, fz4, CD344; frizzled 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016392 True 3400 mRNA 0.48 2 18086767 18091557

Neighbor

gene id symbol gene type direction distance location
AMCG00016391 dync2h1,LOC106613214 coding downstream 17202 18020039 ~ 18069565 (-)
AMCG00016389 dync2h1,LOC106613216,LOC108413322,LOC107566891,LOC103461033 coding downstream 82134 17985431 ~ 18004633 (-)
AMCG00016390 dync2h1,LOC106613216,LOC106593015 coding downstream 138631 17935136 ~ 17948136 (-)
AMCG00016382 LOC107706429,LOC107681140,LOC107548160,LOC107718985 coding downstream 299672 17785858 ~ 17787095 (-)
AMCG00016383 gria4,gria4a,gria4b,LOC107756206 coding downstream 338017 17740632 ~ 17748750 (-)
AMCG00016395 rab38 coding upstream 137554 18229111 ~ 18242329 (-)
AMCG00016396 NA coding upstream 167603 18259160 ~ 18262198 (-)
AMCG00016398 grm5 coding upstream 182673 18274230 ~ 18292859 (-)
AMCG00016399 grm5a,LOC108423821,LOC107693909,LOC107720647,LOC107556864,LOC107701127,LOC107555132 coding upstream 238636 18330193 ~ 18349377 (-)
AMCG00016400 NA coding upstream 288907 18380464 ~ 18399758 (-)
G13129 NA non-coding downstream 590420 17495923 ~ 17496347 (-)
G13126 NA non-coding downstream 592421 17493855 ~ 17494346 (-)
G13091 NA non-coding downstream 709228 17375266 ~ 17377539 (-)
G13065 clns1a,LOC102781126 non-coding downstream 799938 17284403 ~ 17286829 (-)
G13045 rps3 non-coding downstream 840437 17241944 ~ 17246330 (-)
G13254 NA non-coding upstream 71230 18162787 ~ 18165770 (-)
G13334 NA non-coding upstream 734637 18826194 ~ 18901976 (-)
G13339 NA non-coding upstream 966848 19058405 ~ 19058673 (-)
G13341 NA non-coding upstream 985811 19077368 ~ 19077823 (-)
G13366 NA non-coding upstream 996667 19088224 ~ 19088632 (-)
AMCG00016376 NA other downstream 545425 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 820020 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 1216765 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 1225588 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 1611597 16470611 ~ 16475170 (-)
G13367 NA other upstream 999682 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 2037351 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 2524952 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 2574585 20666142 ~ 20683024 (-)
G13962 NA other upstream 5363535 23455092 ~ 23455811 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030484 fzd9a coding NC_007116.7 CM002889.2 56023186 ~ 56027776 (+)