AMCG00016394 (tmem135,LOC107701128)


Basic Information

Item Value
gene id AMCG00016394
gene name tmem135,LOC107701128
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18098011 ~ 18100803 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016394
ATGGCTGCTCTCAGCAAGTCTATTCCGCACAGCTGCTACGAGATTGGGCATACATGGAGCACGTCTTGTACCCTGTCGTCCCTCCAGGTCACCGCCGGAGCACTCGAGGTGTCCTTAAAAATCTATGCACCCTTATATCTCatagCGGCCATCCtcagaagaaggaaaaaggaCTATTACTTGAAAAAACTCCTACCTGAAATCCTACAATCAACTTCATTCCTGACGGCAAATGGAGGACTATACATCGCTTTCTTCTGTATCCTGAGGAGACTGCTTGGGAAATTTTACAGCTGGTCTGCAGGGTTTGGAGCTGCACTGCCTGCCTCATATTTAGCTATTCTAATTGAGCGGAAGAGC

Function

symbol description
tmem135 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism. Orthologous to human TMEM135 (transmembrane protein 135).

NR:

description
transmembrane protein 135

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016394 True 360 mRNA 0.48 3 18098011 18100803

Neighbor

gene id symbol gene type direction distance location
AMCG00016388 NA coding upstream 12908 18081922 ~ 18085103 (+)
AMCG00016387 pdgfd coding upstream 210275 17875444 ~ 17887736 (+)
AMCG00016386 NA coding upstream 406751 17686856 ~ 17691260 (+)
AMCG00016377 gucy1a2,LOC107706059,LOC107669873 coding upstream 459591 17624138 ~ 17638420 (+)
AMCG00016380 NA coding upstream 486851 17603723 ~ 17611160 (+)
AMCG00016393 tmem135,LOC107718730,LOC107701128,LOC107693910 coding downstream 56904 18157707 ~ 18165129 (+)
AMCG00016397 NA coding downstream 263935 18364738 ~ 18370387 (+)
AMCG00016411 fat3 coding downstream 527625 18628428 ~ 18635806 (+)
AMCG00016412 NA coding downstream 562199 18663002 ~ 18663364 (+)
AMCG00016405 NA coding downstream 603064 18703867 ~ 18762647 (+)
G13174 NA non-coding upstream 417102 17658757 ~ 17680909 (+)
G13021 NA non-coding upstream 951013 17143610 ~ 17146998 (+)
G13019 NA non-coding upstream 964481 17133314 ~ 17133530 (+)
G12966 NA non-coding upstream 1221109 16876345 ~ 16876902 (+)
G12929 ppme1,LOC107715282 non-coding upstream 1281680 16815577 ~ 16816331 (+)
G13266 NA non-coding downstream 158465 18259268 ~ 18262343 (+)
G13267 NA non-coding downstream 164399 18265202 ~ 18265406 (+)
G13270 NA non-coding downstream 169230 18270033 ~ 18274439 (+)
G13273 grm5,LOC102779205,LOC106613232,LOC106581415 non-coding downstream 187237 18288040 ~ 18288261 (+)
G13274 NA non-coding downstream 209725 18310528 ~ 18315356 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 498430 17562418 ~ 17599581 (+)
G13012 NA other upstream 976079 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 1612008 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 3314476 14745316 ~ 14783535 (+)
G12587 NA other upstream 3659405 14437771 ~ 14438606 (+)
AMCG00016407 NA other downstream 318214 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 1774253 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 3681303 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 5765464 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 5837248 23938051 ~ 23945024 (+)

Expression


Co-expression Network