AMCG00016395 (rab38)


Basic Information

Item Value
gene id AMCG00016395
gene name rab38
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18229111 ~ 18242329 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016395
CATGCTCACAGGGTAACACATGTCTAGGAAAAACCACAACCGGCGGAGGTCAGTCCCAGCTGTCCGCGGTGCTAGGGGCGGTGCTGCGGTCACAGGAGCCGCTGCTTATTTGCGTTGCTTCTCCAGTCGGGATTATTCAGGGCATGAACAGCATCGTTTGCCATCAGCCTTCGCCATGCAGAACAACCAGAAAGAGCACCTGTACAAGATTTTAGTCATCGGGGATTTGGGAGTGGGCAAGACGAGCATCATCAAGCGGTATGTGCACCAGAATTACTCCCCGAACTACAGGGCGACCATCGGGGTGGACTTCGCCTTGAAAGTTTTAAACTGGGACACCGAGACCATCAGGTTGCAGCTGTGGGACATCGCAGGTCAAGAGCGATTTGGGAATATGACCAGAGTTTATTACCGGGAGGCCATGGGAGCATTCATCGTGTTTGACGtgacaagaccatccacatttgaAGCGGTGACCAAATGGAAGGAGGATTTGGACTCAAAACTGACTCTCTCAAACGGCAAGAACGTGGCGGCGGTGCTCCTAGCCAACAAATGCGATCAAGGGAGAGATGTGTTAACGAACAACGGCATAAAAATGGACCAGTTCTGCAAGGAGAACGGATTTGTGGGCTGGTTTGAGACGTCAGCCAAGgAGAATATAAACATTGACGAAGCAGCCAATTGCCTGGTGAAGCACATTATTGCCAATGAAAACGACATACTACAGTCAGAAGTCCCAGATACCATCTCGCCTCAGCTCAACGCAGTGAAAGACAGCTCCTGCTCCACCTGCTATAAATCATAGGACTGCACTGATGAGAATGGGACTGAGGTCGGGTGGGTGCACAACTGTGTGAATAGCAAAGTATGCAAGAGGTAAATACTTCTGTCTGAGGCCTTacaattttaacacattttgtgtgtgattcatttttattttgttcagttttttttaagcagtgtttgtttttacaatttgttgatACACTGCTTGATATTTACTGATTTCAATGCTTACACTAAATGTCTTTATTCTGTGTTTCTCTACTGAATTAAACCTCTGAGTCTGTGAAGAATCTGATAATCTGAAATCTAAAAACTGGGGCCTTGGATTTTTTACACAGGGTGTATATATgcccatttctgttttttacattttggcacACAGTTGTGGAGTGTTTGATTCTTAAACCTCAGTCGTTGTTCCAAATCTTCATCTAACAATTAGAGCTCAtgtgcatatataatatattattttgatattatttCCAAAGAGAAAACTGTTTAGTCAAGTGCCtaaac

Function

symbol description
rab38 Enables several functions, including AP-1 adaptor complex binding activity; AP-3 adaptor complex binding activity; and BLOC-2 complex binding activity. Involved in several processes, including endosome to melanosome transport; melanosome assembly; and phagosome acidification. Located in several cellular components, including cytoplasmic vesicle; lysosome; and mitochondria-associated endoplasmic reticulum membrane.

NR:

description
PREDICTED: ras-related protein Rab-38

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07923 RAB38; Ras-related protein Rab-38

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016395 True 1305 mRNA 0.44 3 18229111 18242329

Neighbor

gene id symbol gene type direction distance location
AMCG00016392 fzd4,LOC107600811,LOC107551868 coding downstream 137554 18086767 ~ 18091557 (-)
AMCG00016391 dync2h1,LOC106613214 coding downstream 159546 18020039 ~ 18069565 (-)
AMCG00016389 dync2h1,LOC106613216,LOC108413322,LOC107566891,LOC103461033 coding downstream 224478 17985431 ~ 18004633 (-)
AMCG00016390 dync2h1,LOC106613216,LOC106593015 coding downstream 280975 17935136 ~ 17948136 (-)
AMCG00016382 LOC107706429,LOC107681140,LOC107548160,LOC107718985 coding downstream 442016 17785858 ~ 17787095 (-)
AMCG00016396 NA coding upstream 16831 18259160 ~ 18262198 (-)
AMCG00016398 grm5 coding upstream 31901 18274230 ~ 18292859 (-)
AMCG00016399 grm5a,LOC108423821,LOC107693909,LOC107720647,LOC107556864,LOC107701127,LOC107555132 coding upstream 87864 18330193 ~ 18349377 (-)
AMCG00016400 NA coding upstream 138135 18380464 ~ 18399758 (-)
AMCG00016401 NA coding upstream 178424 18420753 ~ 18436028 (-)
G13254 NA non-coding downstream 63341 18162787 ~ 18165770 (-)
G13129 NA non-coding downstream 732764 17495923 ~ 17496347 (-)
G13126 NA non-coding downstream 734765 17493855 ~ 17494346 (-)
G13091 NA non-coding downstream 851572 17375266 ~ 17377539 (-)
G13065 clns1a,LOC102781126 non-coding downstream 942282 17284403 ~ 17286829 (-)
G13334 NA non-coding upstream 583865 18826194 ~ 18901976 (-)
G13339 NA non-coding upstream 816076 19058405 ~ 19058673 (-)
G13341 NA non-coding upstream 835039 19077368 ~ 19077823 (-)
G13366 NA non-coding upstream 845895 19088224 ~ 19088632 (-)
G13392 NA non-coding upstream 923257 19165586 ~ 19253414 (-)
AMCG00016376 NA other downstream 687769 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 962364 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 1359109 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 1367932 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 1753941 16470611 ~ 16475170 (-)
G13367 NA other upstream 848910 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 1886579 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 2374180 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 2423813 20666142 ~ 20683024 (-)
G13962 NA other upstream 5212763 23455092 ~ 23455811 (-)

Expression


Co-expression Network