AMCG00016401


Basic Information

Item Value
gene id AMCG00016401
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18420753 ~ 18436028 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016401
ATGTCTTTGCTGTGTTACAATAAGGGTTGCGGGCAACGCTTTGACCCAGACAAGAATCCCGAAGGTTCCTGTACTTACCATCCCGGAGTACCGGTTTTCCATGATGCGCTGAAGGGTTGCACAAAGGGACCGCATAACAACGAGAAGCCTCCAGAGCCAGTGAAACCAGATGTGAAGACatctggagagaaaaaagactTCGGAGAGGACCTGAAACCAAAATTCAATGAATATGTGATCCAAGCCCCTAAGCCTGTGGAGTCAATCAAGAGACCAAGTCCTGATGAGCCTTTTGTACGACTGCAACAGAAAGTGTCCGTTTCACTGAAACAGTCTTTggaaaaattaaaactaatggATGTCAATGGACCAAAAGAGACCGAGGTCGAAGGGGATGAAGTGAAAATTGGAACATCGTGTAAAAATGGAGGATGTTCAAAGACATTCACTGGGCCAGAAAGCAATGAAGAGACCTGTCTGTACCACCCTGGTGTTCCTATTTTTCATGAAGGGTTGAAGTACTGGAGCTGCTGCAAGCGGAGAACCTCTGATTTTAACACCTTTTTATCTCAAGAGGGATGTACAAAAGGAAACCATTTGTGGAGAAAAAAGGATACCGGGAAGAAAATTGTGCCCTGTCGATTTGACTGGCATCAGACAGGAAGTCAAGTGATCATTTCAATCTATGCCAAAAACTCCATCCCGGAGCAGAGCTATGCGGAAGGAAATAGCACTCTGCTAAACATCCACATCATATTTGAAGGTGAAAAGGAATTTGATCAGAAGATTTGCTTGTGGGGAGTCATTGATATGACCAAAAGCAATATGAATATGACTGCTACCAAGATTGAAATCGCCCTGAAGAAGGCGGAGCCGATGTCGTGGGCCCGGCTGGACCTGCCCCCTGTGAAGATCATGCCAAAGGAGAGAGAGCCAGAGAACGGCGCGCCTGCATACTCGTTGCAATCTAACGGGAGCACCAGGGCATCGGCCAGCTGGAAGATGAGCCCGGCGCGGACCTGTGCCACAGCCAACAGCCTTTTAAAGGACGGATCGATAGGACAGCAAAACATCGTAAGGGACAATTTCCACCGAATCCAGTCCAAACTGCAGCCACTCATCCCTGATGTGCTTGGCCAGGCGCAGGTTCTGCTCTGTTCTGTTCAGGTTCGGCCA

Function

GO: NA

KEGG:

id description
K16729 CHORDC1, CHP1; cysteine and histidine-rich domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016401 True 1176 mRNA 0.48 12 18420753 18436028

Neighbor

gene id symbol gene type direction distance location
AMCG00016400 NA coding downstream 20995 18380464 ~ 18399758 (-)
AMCG00016399 grm5a,LOC108423821,LOC107693909,LOC107720647,LOC107556864,LOC107701127,LOC107555132 coding downstream 71376 18330193 ~ 18349377 (-)
AMCG00016398 grm5 coding downstream 127894 18274230 ~ 18292859 (-)
AMCG00016396 NA coding downstream 158555 18259160 ~ 18262198 (-)
AMCG00016395 rab38 coding downstream 178424 18229111 ~ 18242329 (-)
AMCG00016402 NA coding upstream 461528 18897556 ~ 18901581 (-)
AMCG00016403 NA coding upstream 570055 19006083 ~ 19014749 (-)
AMCG00016404 NA coding upstream 589810 19025838 ~ 19039504 (-)
AMCG00016409 NA coding upstream 673114 19109142 ~ 19143518 (-)
AMCG00016410 NA coding upstream 719306 19155334 ~ 19161728 (-)
G13254 NA non-coding downstream 254983 18162787 ~ 18165770 (-)
G13129 NA non-coding downstream 924406 17495923 ~ 17496347 (-)
G13126 NA non-coding downstream 926407 17493855 ~ 17494346 (-)
G13091 NA non-coding downstream 1043214 17375266 ~ 17377539 (-)
G13065 clns1a,LOC102781126 non-coding downstream 1133924 17284403 ~ 17286829 (-)
G13334 NA non-coding upstream 390166 18826194 ~ 18901976 (-)
G13339 NA non-coding upstream 622377 19058405 ~ 19058673 (-)
G13341 NA non-coding upstream 641340 19077368 ~ 19077823 (-)
G13366 NA non-coding upstream 652196 19088224 ~ 19088632 (-)
G13392 NA non-coding upstream 729558 19165586 ~ 19253414 (-)
AMCG00016376 NA other downstream 879411 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 1154006 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 1550751 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 1559574 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 1945583 16470611 ~ 16475170 (-)
G13367 NA other upstream 655211 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 1692880 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 2180481 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 2230114 20666142 ~ 20683024 (-)
G13962 NA other upstream 5019064 23455092 ~ 23455811 (-)

Expression


Co-expression Network