AMCG00016407


Basic Information

Item Value
gene id AMCG00016407
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18419017 ~ 18473689 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016407
CAGATTTCTATGGGGGACTGAGGTCGAGTTCGTGTAGCGCAGCTctctgctccaccaatgggatcggcgcaattctgcagatctgcgccgAACTGCTGCGGGAATCGGCGCTAATCGAACGCAACGTGGATTCTctcagcTGGTGTCAGTGACAAAACATGGGGAGTCAGAACAACTTTTTCAAATGGTGTTGCTTGTTAGTAgctgttactgttttttttctttttggatttTTAATAgGAAGGTTTGCCCAGCCCACAGCCCACAAAACACATTCCCAACAAAGCTACCTAAAAGGATTGCTCAATGAAATGAAAGCCGAGAACATCAGGCAGTACCTCAGGAAGTTCACTCTGCTTCCTCACCTGGCCGAACCTGAACAGAACAGAGCAGAACCTGCGCCTGGCCAAGCACATCAGGGATGAGTGGCTGCAGTTTGGACTGGATTCGGTGGAAATTGTCCCTTACGATGTTTTGCTGTCCTATCCTAATGAAAGCAACCCAAACTACATCTCTATCATTGATAATCTAGGAAAAGAGATTTTCAATACCTCCTTATCTGAGCCCATCCCTGATGGATATGGGAACATCCCCAATATTGTGCCCCCCTACAATGCCTTCTCTCCCAAAGGTCAGCCGGAGGGCGACCTGGTGTATGTGAACTATGCACGGACAGAGGACTTTTTTCAGCTGGAGCAACAGATGGGGATAAACTGTTCTGGGAAAATTGTCATCGCAAGATACGGGAAAATCTTCAGGGGCAACAAGGTGAAGAATGCGATCCTGGCTGGTGCAACGGGTATCATCCTATTCTCGGACCCAGCTGACTACTGTGCTCCGGGGGTGGATGTTTACCCCCATGGCTGGAATCTCCCAGGAGGTGGAGTCCAGCGAGGGAATGTATTGAACCTCAATGGGGCAGGAGACCCACTAACGCCAGGCTATCCTGCGAAAGaatATACCTATAGATCCAATATAGATGACGGGGTTGGTCTTCCTAAAATCCCTGTGCATCCCATTGGTTATAACGATGCCGTCCATTTACTCAGAAATATGGCTGGGAATGTTCCTCCGAACAACTGGAAGGGGGCTCTCAATGTTTCATACAAAACTGGTCCAGGTTTTGCTGGAGAGTTTGCCACACAAAAAGTCAAAAtgaacatccacacaaacaacAAGGTCACCAGAATATACAATGTCATTGGCAAACTTCTTGGAGCTATTGAGCCCGGTAGGTTTTTGcataacttttttgtattattattttttcttctagttTGTTACAGTTTGCTTCCCAGTTCTGAACATTCCAAGGCCATTCAATTATTCCTATCTGACATGTGATAGATCTCATGACTTACCCAGCCATAAAAGACCTTTGTTCACCTGAGAGTCATACTCATTTCTCGGCCTTGTTCTTCTGACCCTTTAAGGAGTGGACTAAAATCTGCTTCTCTTCATCTTGCTTTCCTCTTGcatgttaatattaataataatatgtaataatgttATGTAATACCTATGGAAAAGAATAATAAGACTGTCTGTGCCACACAGGCTAGTCCATTTAAAGCACATTGTACTTTGACTATTGTAGGTTGTCAGGTCATGTCTAAGTTGTACCACTGTAAGCCTCTGTAgtactatttaaaaacactgcttaAACCTTAAAGAAGCTAGAGGTTAACTTAAATTAGCCacaccattaaaaaaatctggAGAGGTTTGTATGAATACTTACCCAATGATTGTGTAAGTGACAAAATTGACTGAAATCAAGTTCTTAACTTTCCTCCCTCTCATCACTGCTGTCACACCTCTGAGATTTGCTGGCAagatttctgatttctgatttatttcCTCTCGTTGCTCATgctaaaatacattgaaaactgTGTGACAGACAGATATGTGATTCTGGGAGGACACCGCGACTCTTGGGTTTTCGGAGGGATCGATCCCACCACAGGTGCGGCGGTCGTTCACGAGATTGTAAGAAGCGCAGGGAAGCTTGTGAAGGAAGGGTGGGGGCCCAGACGGACGATGATTTTTGCTAGTTGGGATGCTGAAGAATTTGGCTTGTTGGGGTCTACAGAGTGGGCTGAGGACAATGCTAAACTGTTGCAACAAAGAGGTGTAGCTTACATTAACGCTGATTCTGCTATAGAAGAATCAGTAAGCTTGGTTCTGGCAGTGACTTTGAAGCGTATTTCATACGGCTTGGAATTGCTTCTGGGAGAGCAAGATACACTAAAAATAGGCGTCTACGAGACGTTCGAACTGGTGGAAAAGTTTTACGATCCGTCCTTTAAAAGGCTGTTGGCTGTGGCACAGGTCCGCGCCGGGCTCATCTTCCAGCTGGCCGATGCCCTGGTGCTCCCGTTAGATTGCAACGAGTATGCAGGCGCCTTGAGGAAATACGCAAACAGCATCTTCAACCTGGCCTCACAACACCAGTCTGATCTGGTCAAGTATGGAGTCTCATTCGACTCTCTGTTTTCTGCAGTTGAGAACTTCACAACAGCTGCCAAAGATTTCCACGACCGTCTACAGCATTTAGACACGACCAACCCATTGAAGGTCCGAATGGCGAATGATCAGATGATGTATTTAGAACGATCATTTGTGGATCCTCTTGGATTGCCGGGCAGACCCTTTTACAGGTAA
>TU16472
CAGATTTCTATGGGGGACTGAGGTCGAGTTCGTGTAGCGCAGCTctctgctccaccaatgggatcggcgcaattctgcagatctgcgccgAACTGCTGCGGGAATCGGCGCTAATCGAACGCAACGTGGATTCTctcagcTGGTGTCAGTGACAAAACATGGGGAGTCAGAACAACTTTTTCAAATGGTGTTGCTTGTTAGTAgctgttactgttttttttctttttggatttTTAATAgGAAGGTTTGCCCAGCCCACAGCCCACAAAACACATTCCCAACAAAGCTACCTAAAAGGATTGCTCAATGAAATGAAAGCCGAGAACATCAGGCAGTACCTCAGGAAGTTCACTCTGCTTCCTCACCTGGCCGGCACAGAGCAGAACTAGCACAGTTGTAAGACATACAGAATGATTTTTAACGTGCTGCTGATTTGTACACTTTGCTGTGTGAAGCTGGTGAGATAGACAGGGTCAAGTGTAGCCATCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016407 True 2667 mRNA 0.45 16 18419017 18429096
TU16472 False 490 lncRNA 0.47 5 18419017 18473689

Neighbor

gene id symbol gene type direction distance location
AMCG00016397 NA coding upstream 48630 18364738 ~ 18370387 (+)
AMCG00016393 tmem135,LOC107718730,LOC107701128,LOC107693910 coding upstream 253888 18157707 ~ 18165129 (+)
AMCG00016394 tmem135,LOC107701128 coding upstream 318214 18098011 ~ 18100803 (+)
AMCG00016388 NA coding upstream 333914 18081922 ~ 18085103 (+)
AMCG00016387 pdgfd coding upstream 531281 17875444 ~ 17887736 (+)
AMCG00016411 fat3 coding downstream 154739 18628428 ~ 18635806 (+)
AMCG00016412 NA coding downstream 189313 18663002 ~ 18663364 (+)
AMCG00016405 NA coding downstream 230178 18703867 ~ 18762647 (+)
AMCG00016408 mtnr1b,LOC103355263 coding downstream 318234 18791923 ~ 19090628 (+)
AMCG00016406 med17 coding downstream 672671 19146360 ~ 19153760 (+)
G13274 NA non-coding upstream 103661 18310528 ~ 18315356 (+)
G13273 grm5,LOC102779205,LOC106613232,LOC106581415 non-coding upstream 130756 18288040 ~ 18288261 (+)
G13270 NA non-coding upstream 144578 18270033 ~ 18274439 (+)
G13267 NA non-coding upstream 153611 18265202 ~ 18265406 (+)
G13266 NA non-coding upstream 156674 18259268 ~ 18262343 (+)
G13323 NA non-coding downstream 309759 18783448 ~ 18826531 (+)
G13342 NA non-coding downstream 617552 19091241 ~ 19105528 (+)
G13364 NA non-coding downstream 687893 19161582 ~ 19161812 (+)
G13411 NA non-coding downstream 782036 19255725 ~ 19255932 (+)
G13415 NA non-coding downstream 788410 19262099 ~ 19262412 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 819436 17562418 ~ 17599581 (+)
G13012 NA other upstream 1297085 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 1933014 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 3635482 14745316 ~ 14783535 (+)
G12587 NA other upstream 3980411 14437771 ~ 14438606 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 1401367 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 3308417 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 5392578 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 5464362 23938051 ~ 23945024 (+)
G14057 NA other downstream 5606328 24080017 ~ 24110182 (+)

Expression


Co-expression Network