AMCG00016409


Basic Information

Item Value
gene id AMCG00016409
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19109142 ~ 19143518 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016409
TAaggaagatgaagatgaagaggaAGGTGGCGAAGGTAGCGAGGCTGAGACTCAGCCCCAATGAAGAGGCACAGCTTTTGAAAGAGGAGCAGGAGCGGAGACGCAAACTCAGACTACAACAGGTCCGAGAGCAGGAGAGGTCCATAGCCCTGCAGATCAGGCGGGAGGTGCAGCACCGCCGGGACCGGGAGCTGCAGCAGCTGGCCGGGGAGCTGAGGGCGGAGTGGCAGCGGGAGCAGGCGGAGAAACTGCGGGCGCTGGAAAGGCTCTACCAAAGCAGCCTGCAGGCCGTGGGAGAGGGCCACCGGAGCGCACACGACAGCGAACCTGACTGGGCAGCAATCGCACAGAAAGCTGTTGAGAGTAACGAGAAGGCCGAAGAGCGACACAGACAAGCCCTCAAAGAGTTAAAAACAGAAAGGCAAAAACAGCATGAAGATCAAAATCGACGTATTAAAGCTCGGAGGAAAGCTTTActtgcagagaaagagagagctgCCAAAGTTGCCAGTCTCCCGCCCCCTCCTCCAGACCCTCTTGAAAGCATTGAAGTGAAGAAGCTCCGTTCTGTGAAGATGTCTGATGTTGACAGTTTTTCTGTCACGCGTTACCATCTACCTGAAGCTTGTGTGGACAGGGAAGGTGACAAAGCACAGCTGGATGCTCGGGCTGCAGCGCTGGAGGAAGCGAGACGTCTGGAGGAActggagcaggaggaggggCGAGAGAGGGGGGAACAGCTGGAGAAGGCCAGGCTGAGGGGCAGCCATGCTCTCCGAATGGTCCAACTCAGCCAGGACCGAGAGAGGCTGCTCACAGAGCTAGAGCAGATGCAGCAGGCGGACTTGGCCCGGCGCAGGCAGGTTGTGGTACAGATGCCACCCCAGCTCTTCGTACCTCCTTACAGGCGACAGGAAATCAAGGAGGACTGGCAGAGAGACCTGGAGTTTGCGTTTGAAGACATGTATTCTGGGGACCGAAGAGTGAAGGGTGACCTGGTCCTGCGCTTGGCCCCAGAGCCCCTGCCCACACTCTCGACAGGAAGTCAGGATGGAGAGTTAGATGTGACCCTGGAGCCTGTGGTAACGCCTAGCGGTGATGAACAGACTGAGGAGAGCCAATCTCATGACTTGCCAAGAACAACAGAAGGTGAAGCTGCGACGGGGGCTCCTAAGCAAGCCCTAAAGAGACTGCTGAGTAAGATCAGGACCCAGAGAGACCAGTGGAGCTCTCGCAGTGAGGCTGAGACGGACACTGCCATTGAAGCTATGACCATTGAGTCTGGCTCATTGACCAGTGAAGACCAAGTGCGGGCCCGCTCCTCTGACCACAGAGATGGACACCAGTTGCCTACTTTTGCCCAGCACACCAAAGgtGGTATAATGCCAGAGGAGTCCATTGTTGCTGGGAGTACAACTCTGCTGCATCCTAAAGAGCAGGCAATCAAAATGCGGTCTGCTGCCGAGAGGAGAAAACAGGAAGAAGAGTTGGAACAGAAAAAGCAAGAGCAGATTGCCCTGCTACAGCAGTTAGAGGAGCAGAAAAGAAGCCTTGAGGTCCGTTTACAGGAGGCCCAGCAGGATAAGCAGCGTCTGCAGGCCTTGATGCAGGAGAACCTCCAGAGAGGAGTCCAGCAGCCCTCCCAGGAGGAAGAGCCAGTCTGTACTGCGGCTTCACTCCCTCTGGTACAATGAACTActtttctttcacaAGCTGTACATTTTAGATATCTTGACAGATTGATTTGTTCCTTGCAATTTGGCAGCCTGCATAAACAGTCAGTTGAAGAGGTCCGGCAGCGCCTTGAAGACTATAAGCAGATATTGAAGAGAAGGTACCCATCTTTGTCTACAACTGCACTGCATCCAGTTCCTCCTGATGCCCTGGCATCTACACATCCCACCCATTTCCAGGAAGCTGGAGTTAGCAGTGGTCATTTGGACACGAGCCTGATGTCTAAAGAAATGGTGGATGTGCATTTGGAAAAACGTCTAGAACTAGCTTGCTTTGAAAATGCTGGAAAAATGCCACCTGGCCCTTCTCACTTTGACAATGTTAAGTTGCCTGTAAAAACACTTTCTAACTTTGCCACAAAAAATCGGGTTCAAATATCTGAATCGGAAAATGCCTTTAAGACCCAAATATTACCTGGTCCTCCAATTCCAACCAGTGCTTCCTCTACaagacaattaaaatcaaaccagGACTCAAAAGCCTTGAAAATTGAGCTGCATTCTGGCAGAGACGTGCAGCCCGATTCCAGAGTTGCAAGAAGCCAAAGCGTGCATCAGACATCACAAGGAAGCCTTGGACGTGAGAGATCAGAGGCAGACATCAGAAGGTTTATAGAAGTCTATGAGAACCATCATGAAAGTCCTACCCAGATCCCCTCGTCAGCACTCCTCGGAGCTTCTGAAGTTCAGCCCCAGAGAATGCCACTGGTATCTGCAGGAACTCCTCATACCGACACCAGTTCAAGTCTGCCACAGCAACAGCTGCCTTTACCCGAGGTGTCACAGGATCGCTTAAAGCCGGACCATTGCACAGCGGTGGCAGATGCTCGTTCAGGAATTCAACCTCCTTCCTTTGAGGCTTTCGAGGGGCGGGACACGCTGCTGGTGACGGCTGCTCAGATCCAAGCCAAACAGCAACAGCTCTGCGAGACACAGGAGCGACTGGACAGGCAAAGAGAAGCATTCCTGCACCAGCAGAGGGTCCAGGAAGAGTCTCTACTCCAGAAACAACACCAGCTGAAGGAACAGATGAGGCCGCAAGCGTGCCTGGAAATGTTCCTCGTCGACAAGCAGccTAAACAACCCAAGCAGGCAGCATCGGTGTCGAAGATCGACAAAGCGGAACATTTCAGTCTGTCTGCGCTGCTGCGAGCCGTAGAGCAATCTGATCGCGGTCCTGCACAGTCACAGAATGTGCATCTGCAGCTTAATTTGACTCCACAAGCAAACCAAAGCCAAACGATTTCATTTACCCATCAGACATTTGTGCCAAGCAGTTCCCCGTCTCAAAATGATGACCATGGCAGAGTCCTCCAGCTGCACCGGCCACACAAACCACCACTGGCCAAACCTAGACTGGGGATTTTAGACATGATTGAGCAGCATGAACTCAGTGCCATTCAGGAAGTTGAAACGCCTATGAGTGATGGCTTTCCCATCGgAGAGGAATCTGGAGAAGAATCTAGTGACTCTGCTGCTGGATGTCCACAGGACAGAGGCTCTTTTGAAACCGGAAATGGACAATTGGGAACCTCCCACAGTAGTGAAATAAGCTCCAGTGGTGCTGACACGGGCCAATCCAGCAGACtgtcctggagagagaggctCTTCCTAGAAGCTTGCTCAGCCCCACGTGCTGGACCCCCTACTGCCCCCCTACCTTCTTCGTTGATTGATTTGCCAAGCTATTCTTCTGATATCGGTCAAGGTGTAGTGAGCTTTCCTGGCCCACTTATTTCAAGTTATAAACCAAGAAATGAGGCAATGATTCCTCAGTCAACACAGGCTGTTTTTTCCTATCCGTCAATGCAAAAAATGTCCGATCCTGAATGCTTGTCATCCACAACCATTTCAACTGGAAGCTTTTCTGCCACTGAACTGGACTTCAACTCTCCAGGAATTGATTCTTCCACGCATGCTGCAGAATTTACAGCAGGAAAACCTTCTGCTGCCTCTCCAAGCAGATTGTCATCTTCATCTGATCACCACAGTGCCAGCAGTGATGCCTCCAGGCTTGTCTCACCCTTTTCAGATTCAGTCCTTCATAGCAGCAGCATTCAACGTATTATTGACAAATACACCAAAGAGCTGAATCACTCCTTGGATACTGTTGGGAGCTTTCATGCACCCTCAGCTGCGATGGATGTTTCGGATTTGGGGGATTCGAATTGTCATATCTCCCTTCGGTTAACAAAGCATGATTACAGTCAGCATTTCCAGCCTCTGACACCAAGAACAGACTTTGATGTTTCAAGTTCTTCATCCCTCCACTCGGAGAGAAACTCGGTGGTACATAGAACAAAGGATAGCTCTCAGAGGCTTATAGGTACCTCTGCCTCCATgtgcattcaagatggaaatgGAAGACATCTTGGCAGAAGTCTCGCAGATATTTCCAAGCAAACTGAAGTCATGGAAAATAACTCGGGCCACTTTCTTCCTTTAGAACCAAGACCCGACTTCGAAgaatcttcctcctcctcacagCAATCTGAAAGACCAGCACAGTCAACGAGTGTGGAGGAGATGGACTGCTCAACCCAGAGATGCTTGACTGACATTCCCACAGTATGTCAATCCTCTGATTCAGCTGCCAAAGGAGATTCCAGTGTTCACCTCCTGACCCAGCGGTCCCACGCAACCACGCATCAATACCACTCTATAGATGTGAGAACAGATGGTTCAAGCTCCTGGCGATCACAGGGAAGATCCTTTGAGGACGCCAGAGCTGAAACTTCCTCTCCAGTACATCAATCTCTTACCAGGGGTTTGGAAATGTCAGTGCAGCACCGCTTAAGTGACTTGGCTCCAGTGCAGCAATTCAAAAGCTTTGTTCAGGAGATTCACCACGAAGGAAGAGAATCGTCAACCCTGTCTGCCCAAGATGAAAACACAGGGGtGGAACCATCTTCAGAGAGCTTCTGTCCTCTGCAGCCCGAAATCACCTTGAATGAGATCGGCGAGAGCTCCTTCACCTTTAATCCAGCAGCTGAACGATTTCTGCAGCTTGGCACCCAGGAAAACCAGACTTGCTCCTCGGACGTCAGCGAATACCTTCTCCTGCACGCCATCAATGCCAACGAACATCCTGCTGTTGTGACCAGATCGCAGGAAGATGTGGATCTCTCTCGGCTCTCTGAAGAACCAATTGAGCATTTGAGATGTCAAAGTGAAGGAAGGGAGCCAGATCTGCAGGAGTCAGTCTATCAGCTGGTAACGTCTCGGAGCACGATAAACAATTCTGTTTTGAGTGAGCCCCCCGTTACTGAAGCTGTGAAACTTGTGGGTCGTCATCTGGGTGAAATTTCTCTCGGTGACGCAAGACATTCGCCAAGTAAACTAGCAGAAGAGCTTTGCTCAGATGAGAGAGAGGATGCTTCTGTACTGGAATTTTCTCCAGAAATCGAATCTTCAAAGTTGGAGTTGGCACTCAATGAAAGAGCCGCCACGCTGCAACGGGAGCACTTGGATCCTCTGGGTTTAGCTCCAGAGGCTTCAGGAAAGAAAGCCAGTTCGAAGTTCACCATACCTTTCTGGGAGGCAGAAAGTGGGAGAGGAATCATGGAAGAACCTGAACTGACTCTAATGAGCCTAAATGAAACCACTCTGCAAGAAGAAGAGCTAACCAGCAGTAATGGGGAGGAAACCACGGGGGACCGAAGTGAGAAGCCAGTGGGCCTGAGCGAGCGCCTCGAGCTGGAAAATACCACTGAGGACTTGACATCTAAGACTTCCATGGAGGAAGACCGTTCTGTGCCCACTGCTGCAGATAATGCTGCAGAAGAATGCAGGCGATCAAAAAATGAGTCATCGCCCTCGTGCGcagTGATGCTTCTGGAATTCCCTTCCTCTGCTGGTGACTTACAAGAGCGCTTTCTTCACAAAAAGAATGCATTAATCCAGAAGTCTGCTAAAAGAGTAGAGGAGATAAAAACTCGAAGTCTACAGTCAAGAGATCTTCACACATCTCTTGCACAGAGTTCAAGCTCACTCAAGAAGGCAAAGCCTCAGCCCTCGGCCAGCGTGGTTGCGCTGAAGAAGGTGGGCAATGTGAAAGTCTGCACGCCTGAACAGAGGAAAGATACTGAAGCCGACATGTACCAAAGGACACAGAGGTTATATAATCAACTAGATGAGGTGAAGAGGCAAAAGGAAATTAAGATGAGACAAGAAGCCTCCTTAAAAAATCGTGAAAAGGCAAAGGAGTTCCAACAGAAAACTCTCCAGAAATTGAGAGCCAAACGGACACTGCACTGAAGTTCCTGAATTAAGTTTTTAAGTGATTATATTTTAGTAAAGGGACcaactaaacattttatttttgtatgtatatataattgaaaactCATATTTAACAAACTCATTAAATGATTGTCTGCTTTTAAGTGCACTTTTGTACAAAAATGTTtgcctaattaaaatgttttacaag

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016409 True 6165 mRNA 0.50 31 19109142 19143518

Neighbor

gene id symbol gene type direction distance location
AMCG00016404 NA coding downstream 69638 19025838 ~ 19039504 (-)
AMCG00016403 NA coding downstream 94393 19006083 ~ 19014749 (-)
AMCG00016402 NA coding downstream 207561 18897556 ~ 18901581 (-)
AMCG00016401 NA coding downstream 673114 18420753 ~ 18436028 (-)
AMCG00016400 NA coding downstream 709384 18380464 ~ 18399758 (-)
AMCG00016410 NA coding upstream 11816 19155334 ~ 19161728 (-)
AMCG00016414 NA coding upstream 41420 19184938 ~ 19205594 (-)
AMCG00016419 NA coding upstream 133780 19277298 ~ 19279668 (-)
AMCG00016420 mre11a coding upstream 138184 19281702 ~ 19316677 (-)
AMCG00016418 cwc15,LOC100196400 coding upstream 222566 19366084 ~ 19375596 (-)
G13366 NA non-coding downstream 20510 19088224 ~ 19088632 (-)
G13341 NA non-coding downstream 31319 19077368 ~ 19077823 (-)
G13339 NA non-coding downstream 50469 19058405 ~ 19058673 (-)
G13334 NA non-coding downstream 207166 18826194 ~ 18901976 (-)
G13254 NA non-coding downstream 943372 18162787 ~ 18165770 (-)
G13392 NA non-coding upstream 22068 19165586 ~ 19253414 (-)
G13413 NA non-coding upstream 113120 19256638 ~ 19256919 (-)
G13414 NA non-coding upstream 114805 19258323 ~ 19258557 (-)
G13615 NA non-coding upstream 859631 20003149 ~ 20004940 (-)
G13680 NA non-coding upstream 1172224 20315742 ~ 20316579 (-)
G13367 NA other downstream 3761 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 1567800 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 1842395 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 2239140 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 2247963 16858541 ~ 16861179 (-)
AMCG00016453 NA other upstream 985390 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 1472991 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 1522624 20666142 ~ 20683024 (-)
G13962 NA other upstream 4311574 23455092 ~ 23455811 (-)
G13969 NA other upstream 4555631 23699149 ~ 23700255 (-)

Expression


Co-expression Network