AMCG00016413


Basic Information

Item Value
gene id AMCG00016413
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19224261 ~ 19237093 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016413
CTTTAACGCACAGACTCGCAGTTTCACAGTTTCATAACCTGGAAATCGATATCTTTTGTTGGAGCCAGAGGACAGAGGAAACACGTTGTGTTTTCCAAACATGATGCCATAAAACGGCAGACAGATTGGGTTTTAACTTGTATTCTTCGCCATACGGTGCCTGGGTCTGGGCAGCCACTGTGCAGCAATGAAGCCGTCGCCCGGCCCGGGGCTGCTGAGCCTCTGCTGTGTCTGCGCTCTGTTTCCTGCGCACGAAGGCGCCACCAGGCCTTATTACATTGGCATCAGAGAAGCAACCTGGGACTATGCGCCCAGCGGCCAAAACCTCATCACTGGCCAGGACGTCGGGGAAGATGAgcatGCATCTGTATTTCTGCAGCGAAGCCAACGGACTATAGGAAGTCAGTACAAGAAGGCTCTATATCATGAATACACTAATGGTAGCTATACTGAAGAAATTCCCAAACCCAGCTGGCTTGGGTCTCTTGGTCCAATCCTGAAGGCAGAGGTGGAAGACGTTATAGTTGTGCACTTGAAGAACTTTGCCACAAGACCGTACTCCATCCATCCACATGGTGTTTTCTACGATAAATACTCTGAAGGAGCCCTGTACCCTGACGGGACATCAGGGAACCAGAAGTGGGACGATGCTGTGAACCCTGGAGAGAACTACACCTACACTTGGGTGGTGAAGCCAGAGTACGCCCCAACTGAGGGCGACGCCAACTGTCTAACCTGGGTCTATCACTCACATGTGCATGCGCCTCGGGACATCAACTCTGGCCTGATCGGCAGCATGCTGACTTGTAAAAAAGGCACTTTCCTGGAAAACACGACTGTGCGGACGGATGTGGATCAGGACTTTGTTGCTATGTTCAGTGTGATAGATGAGAATCTGAGCTGGTATCTCCAGGACAACATCAAGACCTACTGCACTGATCCTTCTGCTGTGGATATACAGGATAAGACTTTTGAAGAATCCAACTATAAGCACGCCATCAACGGATATCTGTTTGGGAACCTGCCTGGCATCACCATGTGTGTGAACAGTAGGGTAAATTGGCATCTTTTTGGGATGGGGAACGAGATTGATATCCACTCTGCACATTTCTATGGCAACACTGTGGTGGACAGAGGCCACAGGTCTGATGTGATTAGCCTGTTTCCAGCCTCGTTTGCTACCTTGGAGATAAACCCTAGGAATGTTGGGAAATGGATGCTGAGTTGCCAAGTGAATGATCACATGCAAGCTGGAATGCAGGCTTTTTACGAAGTCGCCTCCTGTGGGAAAGATGGCCCTACAGCTTCCCCTAGCGGCAAAACAAGGCATTACTACATCGCTGCCGAAGAAATCATGTGGAGTTACGCGCCTTCAGGTGTCAAAGCTTTTAATGGTGTGCCTCCAAGTCACAGCATGCCAAGGGGACATTATTTGAAGGCTCATTATGTGGAATATACAGATCAGACTTTCACCACCAAGAAACAAACTGAGATGCATCTCGGTATTCTTGGCCCTGTGATAAAAGCAGAAGTTGATGACACCATTATAGTGACCTTCATGAATAAAGCAATGAGGAACTATAGCATCCAGCCGCATGGATTGCCTTATAAGAAAGAATACGAAGGAGTAAGCTATAATGATGGTATTGAGAAGCGTGGATCACATGTCCAGCCCAATGAAGTTTTCAGCTACAGGTGGACAGTGACTGACGGCCCGTCTCCCAGTGACCCGGCCTGCATTTCTTACCTGTACTACTCCGCCAGCGACCCTATTCGGGACACTAATTCAGGACTTTGTGGGCCTCTGTTACTGTGCAAGAAGGGTACTCTGAATAATAAAGGCCTACAGAAAGGGGTTGATAAGGAGTTCTTCCTGCTGTTCGCCGTGTTTGACGAGAACCTGAGCTGGTACATGGACAACAACATGCTCATGTCTGGGACAGGATCTCCAGACACAATGAATGATGGCATTGAGATGCCCAATGCAATGTCCAATGACATGTACATGCATGCTGTGAATGGTTACATGTACGGGAACCTGCCTGGACTTGAGATGTGTGAAGGAGACACCGTGTCCTGGCATATGCTGGGTCTGGGCTCAGAGATGGACGTACACGGTGTCTATTTCCAAGGCAACACCTTCAGGAGGGACGGAACCACACGAGACACGCTCAGCCTGTTCCCACACACTGCTGCCACTGTCACCATGCAGCCGGACTCTGCTGGTACATTTGAAGTGAGCTGCATGACCACAATGCATTACCAGGGAGGGATGCGACAGCTGTACACTGTGAAGAAGTGTATAGGCAGtcctccctcttctcccagttccaccaccaccacctcggTTGCGATATACTACATTGCTGCTGAGGAAGTGGAGTGGGATTATTCACCAGACAGGGTCTGGGAACTCGAGAAACACAATACCACTGAAGAAAAAAGTTATGGACAAGTCTTTTTAGGTAAAGGAGAGGACCGAATAGGCCCCAAGTACAAAAAGGTGGTGTACAGGGAGTACACTGACAGTCATTTCACAGAGCGGAACATGAGGTCTCCACGTGAGGAGCACTTGGAGATACTGGATTTTGTCAAGGACACTTTCAGTGGGCTGATTGGACCCTTGATTATCTGCAGGAGGGGCATTCTGAACTCAAAGAGACAGAGGGTGGATATAGACCGGGAATTTTCCCTTCTTTTCCTGGTGTTCGATGAAAATCAGTCCTGGTATCTGGATGACAACATCAAAACCTACCTACCCATGAACATGGAGATGAATCATGCTGAAATGGATGAAGACTTTATGGAAAGCAACAAAATGCATGCAATCAATGGGAAGATGTTTGGCAATCTTCATGGACTGACGATGATTGAAGGCGAGAAGACGGCCTGGTACCTGCTGGGAATGGGCAATGAGATGGACATACACACCGTCCATCTCCATGGGGAAACCTTCATTTACAAAACTGACAGATCCCACCGTGCTGATGTGTATGACGTGTTCCCAGGGACCTTCCAGGCTGTGGAACTGACTGCAGAGAACCCGGGCACCTGGCTGCTACACTGCCACATCGATGATCACATTCGCTCTGGCATGGAGACCACATACACCATCAAGGCCAGGACAGCTCAGGGCAAGACAGTCTTTACTCATCATCTCTATTCTTTGGTTAATACAGTGTCACATGTTCACTGTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016413 True 3199 mRNA 0.49 17 19224261 19237093

Neighbor

gene id symbol gene type direction distance location
AMCG00016406 med17 coding upstream 70501 19146360 ~ 19153760 (+)
AMCG00016408 mtnr1b,LOC103355263 coding upstream 133633 18791923 ~ 19090628 (+)
AMCG00016405 NA coding upstream 461614 18703867 ~ 18762647 (+)
AMCG00016412 NA coding upstream 560897 18663002 ~ 18663364 (+)
AMCG00016411 fat3 coding upstream 588455 18628428 ~ 18635806 (+)
AMCG00016416 NA coding downstream 2094 19239187 ~ 19251854 (+)
AMCG00016415 NA coding downstream 79735 19316828 ~ 19322281 (+)
AMCG00016421 NA coding downstream 87487 19324580 ~ 19325707 (+)
AMCG00016417 NA coding downstream 102733 19339826 ~ 19362470 (+)
AMCG00016422 NA coding downstream 201500 19438593 ~ 19444885 (+)
G13364 NA non-coding upstream 62449 19161582 ~ 19161812 (+)
G13342 NA non-coding upstream 118733 19091241 ~ 19105528 (+)
G13323 NA non-coding upstream 397730 18783448 ~ 18826531 (+)
G13274 NA non-coding upstream 908905 18310528 ~ 18315356 (+)
G13273 grm5,LOC102779205,LOC106613232,LOC106581415 non-coding upstream 936000 18288040 ~ 18288261 (+)
G13411 NA non-coding downstream 18632 19255725 ~ 19255932 (+)
G13415 NA non-coding downstream 25006 19262099 ~ 19262412 (+)
G13458 NA non-coding downstream 140907 19378000 ~ 19442114 (+)
G13490 NA non-coding downstream 220956 19458049 ~ 19462968 (+)
G13491 NA non-coding downstream 226388 19463481 ~ 19463953 (+)
AMCG00016407 NA other upstream 750572 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 1624680 17562418 ~ 17599581 (+)
G13012 NA other upstream 2102329 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 2738258 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 4440726 14745316 ~ 14783535 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 637963 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 2545013 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 4629174 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 4700958 23938051 ~ 23945024 (+)
G14057 NA other downstream 4842924 24080017 ~ 24110182 (+)

Expression


Co-expression Network