AMCG00016416


Basic Information

Item Value
gene id AMCG00016416
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19239187 ~ 19251854 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016416
caaaaagtCCCTCCAGTGCTGGACAGGCAGCCACACAGCGCGGAGATGCCAGACCTGCCCCGGCGGTCACTGCTAGCGAGGGCTTAACTGCAAGAAGCTGGGATGCACATGGAGATCAAACTCACTTGATCACTTTCCAGAGTTAACAAAACGAAACCGCGGGCGGAGAAGACGGAGCCCTTGTTTTGATCTTGGCAGACGATGCGGGTGTAAGAGCCCAGGCCCCGGCAGCCCGATTCCGAGACGAGGATCTTCTTGGGCACCGAGCAGGACAGCCAAGGAAGCCATGGCGATTGCACATGTAGCCACAGAGTACGTGTTCTCCGATTTCCTGCTCAAAGAGCCGTCCGAGTCCAAATACAAAGGCGTGAGACTGGAGCTGGCGGTGGACAAGATCGTCACTTGCATTGTGGTCGGGCTGCCTTTGTTGCTCATCTCCCTTGCCTTTGCTCAGGAGGTGTCCGTGGGCACCCAGATCAGCTGCTTCTCCCCAAGCAATTTCTCCTGGCGACAGGCTGCCTATGTGGATTCCTTCTGCTGGGCcgctgtgcagcagcagcacttgTCCCACAGCGACTATGGGCGTTTGCCACTCTGGCTACACAAGTTTTTTCCCTACATCCTCCTGCTGGTGGCCATTCTCATGTACATCCCAGCCTTGTTCTGGCGATATACTGCAGCTCCGCACCTCTTCTCTGACCTCACCTTCATCATGGAGGAGTTTGACCGCTCCTACAACAGCGCCATCAAGCTGGCCAAGAGCATGGCCACCAATGGGGTCCTGGACTCCAGCACTGCCCCTCCAGACACACGCAGCTCCCTGGATCTGACTGAAGGTTATTTTAAGTACCCGTTAGCTGAGAACTATCTCAAGACAAAGAAGGCGTCCAAGGGTCTAATAATCAAGTACCTCATCTGCCGTACCATGACTTTTCTCATTCTTCTATTCACTTGCATATACCTGGGGTACTACATCAATCTCGCCGCGCTCACGGACGAATTCAAGTGCAACATTCGGACCGGAGTGCTCAAAAACGATAGCCTGATCCCTGACTTTCTCCAATGTAAGCTCATTGCGGTTGGCGTATTCCAGCTCCTTAGCTATATCAACTTAATAGTATATGTCATAGTGGCACCTGTCATTATCTACACCACCTTGATTCCAGTCAGGCAGAGCACGGAGTTCCTCAAGGCCTATGAAAGCTTGCCCACCTTTGGCTTCATGGACACCTCATCTAAGTTCTATAGTGACTTCAGTTTGTACTTACTCTTCATGGAGGAAAACCTCAGCGAACTGAAGTCCTACAAGCGCCTGAAAGTCCTAGAACACGTGCAGCAGAATGGCGAGGGGAGTCTCGATATAATGTACCTCTTGAGAAATCTTGGCCAGGTGAAGACAGATGCTGTAGATGGCAAGATACTCCATCACCATAGCAACAACAAAGCAGCCAgattagaaaaggaaaataacgcAACTGAACTGAAAGAGTTGTCCGACTTATCATTGGAAGACGGACTCAAAGATAAAAAACTCAGGGAGGAGAAAGCGGTACGACAGAGAATGCTGGATTCCACCTCCACGTGTTAACGGCAAGTTTCTACTCTCAACATGTTGAAGCTGGATGATGAAGAAAGACTGTCCAAGACTGCTTCATCCAGCCCGGAATTGGCACCGGAATTACGGTTGGACAATTTTTGCGGTAGAAATTTAGAATCTCGACGATTCTGAAGACAAGGACACCATTCAACATGCGGTACTGATGGCAACTCTCTTTTGGTAGCTCAGATTTAATATTCGTTTACagatatttttatgtaaaatgtattggcTATTgatcttcaaaatattttctgcaAATGGGTCTGCAtgttttgtcttgtcttgtgaTCTTCCCCCCCCCTACTATCtttttaagtgatttaaaatacactgcTGTGTGGTACACCAACATACCTCAGGTCAGATCTTCAAAACGTGCTTTTCTTGTTCACcgaaaaatatgaaatgtgaaaCACCACTGAATGCTTGAAGATATTACACTCGGCATAAGGACATTAGTTCTGAATTCTGGTTCTGCATGTGGTTAAACCTCACTCAGGATATGAGGGCCTGCTCATGCTTGGTGTCAGTGGTAAGGTTATGAATTGCGGTGAGCTGACTTCCGTTGAAGCTGGAAGGTTGAAGGTGTTGCATGGATTCACGTAGACATGCCTGCGGTTGGGTTGTTTTGCTGTaacaatgaacacaaaacactgaGCCTGAGAATTATGTATTTAGAATTGAAAATGACACTGTTAGAATTTGGCTTCTAGTAAAACACCTCAGGAAATGTGTTTGGAAGTGACCTTAAAATGTGCAGCGCAAGGGTTTCTGTATTTCTTCACAGAAGAAGATAAGGGCCCATGCAGTGGCAGTTAAGCTGTATACACTTGAAACTGAATGGACCCGTGAgatttgattttacatttatcATGGCTTTTGTGACTGAAAGCTTTTATGATATTTGAGAACAAAACcgattttctttaattttctgtgattttattattcGTACTATCAAatgctttcattgttttttgtggatGTTGTAGATCATTtcacctttaaaacaaaaatcaaactgCCAAAAAATATTTCGTTCTTTGTCAGAGAAGCCTTAATTTCTTACTTTATAGAACGTATCCAAtgctgcttttgtattttttttttgtagatacGTTTCTTAAAAAAATTTGCTATTTTTTACACTTTCTATCTAGGCCTACATTGCTTGTTAGAGTTTCAGACCACTAGATTAAAGCTGAAACAATTAGATGTTCTCAATCGAAGGCTGTGTGGGAGACCGTCACCCTATTTGTTCGTAGTTCTGAATGAAAAGGGTAATTTTACTTCTCATTCACGGAGTtggcagtgatttttttttttcaagcagtCATGATTAAAACTAAAGCAATCTAAAACTAAAAGTGCTATCTTAATTAACTTTCCTTGGGCTTCCAGTTTCTAATTGGATGCATGCTGTACCAGTACTTCTTGCAGCCAACATAAAGAAGACTGAATAGAATGAAAAACCGATGGAATGCCAAAGAAAACTGACCAATGTAAATGATTTTGCGAGTTGTACAGTAgatgtatatagtgtatatacagtggTTTCCATGTGTTTGCACTCTTGCTGGTGATGTACAGATGTATAGCTGCTAGTGCTCACATTGCTCTGAATTTAGAATGGAGTGCTATTGcagttatttaaattgtgtcCATTACCATCTATGAGAGAATTTGGGGATTTTAATTTATACttctatgcatttttttttttttttttttttttacttttatggaTTTGTCC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0051049 regulation of transport biological_process
GO:0032587 ruffle membrane cellular_component
GO:0022832 voltage-gated channel activity molecular_function
GO:0055077 gap junction hemi-channel activity molecular_function

KEGG:

id description
K03443 PANX1; pannexin 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016416 True 3353 mRNA 0.44 5 19239187 19251854

Neighbor

gene id symbol gene type direction distance location
AMCG00016413 NA coding upstream 2094 19224261 ~ 19237093 (+)
AMCG00016406 med17 coding upstream 85427 19146360 ~ 19153760 (+)
AMCG00016408 mtnr1b,LOC103355263 coding upstream 148559 18791923 ~ 19090628 (+)
AMCG00016405 NA coding upstream 476540 18703867 ~ 18762647 (+)
AMCG00016412 NA coding upstream 575823 18663002 ~ 18663364 (+)
AMCG00016415 NA coding downstream 64974 19316828 ~ 19322281 (+)
AMCG00016421 NA coding downstream 72726 19324580 ~ 19325707 (+)
AMCG00016417 NA coding downstream 87972 19339826 ~ 19362470 (+)
AMCG00016422 NA coding downstream 186739 19438593 ~ 19444885 (+)
AMCG00016432 clpb,LOC107568463,LOC108261447,LOC102793156 coding downstream 506473 19758327 ~ 19799814 (+)
G13364 NA non-coding upstream 77375 19161582 ~ 19161812 (+)
G13342 NA non-coding upstream 133659 19091241 ~ 19105528 (+)
G13323 NA non-coding upstream 412656 18783448 ~ 18826531 (+)
G13274 NA non-coding upstream 923831 18310528 ~ 18315356 (+)
G13273 grm5,LOC102779205,LOC106613232,LOC106581415 non-coding upstream 950926 18288040 ~ 18288261 (+)
G13411 NA non-coding downstream 3871 19255725 ~ 19255932 (+)
G13415 NA non-coding downstream 10245 19262099 ~ 19262412 (+)
G13458 NA non-coding downstream 126146 19378000 ~ 19442114 (+)
G13490 NA non-coding downstream 206195 19458049 ~ 19462968 (+)
G13491 NA non-coding downstream 211627 19463481 ~ 19463953 (+)
AMCG00016407 NA other upstream 765498 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 1639606 17562418 ~ 17599581 (+)
G13012 NA other upstream 2117255 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 2753184 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 4455652 14745316 ~ 14783535 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 623202 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 2530252 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 4614413 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 4686197 23938051 ~ 23945024 (+)
G14057 NA other downstream 4828163 24080017 ~ 24110182 (+)

Expression


Co-expression Network