AMCG00016418 (cwc15,LOC100196400)


Basic Information

Item Value
gene id AMCG00016418
gene name cwc15,LOC100196400
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19366084 ~ 19375596 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016418
AAAAAAGCTTAAATGTTACAATGAACAATCTCTATAGTATAATGATGTTTAAACGATTACTGTCAGTTCTATCGAATGTGaatgtttattgaaattaaCACATAAATCTCCACCTGAGACTATTCTGTAACCACGCGTATTCATTGTTACAAaacatccaaaaataaaataaaaacgcgTTTAAAAAAATCGAAGCGGTCTTACAACGCTGCCTAGGTTTATTCTGTCCTGTGTGGCACTCCGTAGATTTCGCGCGCATTGCTCCATGGGATACTGGATGTTTCTACAGTATTAGCGTCTGGGTTCAGtaaATTGTCCACTGGATTTTCAATTGAGTAAAGATGACTACAGCTGCCAGACCAACGTTTGAGCCAgcgagaggagggagagggaaaggggaaGGAGACCTCAGTGCCCTGTCCAAACAGTACTCCAGCAGAGACTTGCCATCTCATACCAAAATCAAATACAGACAGCCTACCCAGGATGCCCCCGAGGAGGTGCGTGCCCGTGACTTCCGCAGAGAGCTGGAGGAGAGGGAGCGAGTTGCTGTCCGGGACAAGACCAGGGACAGGCCCGCCAGGGagcACACCACTTCATCATCCTCGTCGTCCAAGAGGCCGCGCTTAGACCAGATTCCCGCAGCCAACTTGGATGCTGATGACCCCCTGACCGATGACGACGAGGAGGACGAGGACTCTGATGAGGACAGTGACGATGACACCGCGGCTCTGCTGGCCGAGCTGGACAAGATCAAGAAAGAACGTGCTGAAGAGCAGGAGCGCAAGGAGCGGGAGCAGAAGGCCGAGGAGGAGCGCATCCGCATGGAGAACATCCTCAGTGGGAACCCCCTGCTCAACCTGGccgggcagcagcagcagcagcagctggtaCAGGCCCAGACCACCTTCAGCGTCAAGAGAAGGTGGGATGATGATGTGGTATTTAAGAACTGTGCCAAGGGTGTTGACGATTCAAAGAGGGAGAAACGATTTGTGAACGACACCCTGCGATCCGAATTTCACAAAAAGTTTATGGAAAAGTACATCAAATAATGTTAATGGTGCTTTTATCACAGGCATTGTGTGTTTGGGTTGCTCCATTTTGCTGAGGAAAGGGTCCTTGTGTTTAGTGGGTGGGGTTCTGTATGGTTGAGGTTAACCAGGCAGAACACTGCTTTTTCCCCTTTAcaatttgtttgctttcttcagtctcatttgaaatgtattgtgtaCAGTCAAACTCTCACTGATAATTTAAGGATCTattgattaaaatatgcattttatttcctggGGATATACCTGTAACACAGGGACTCAAATGTACTGTCAGAATTCTTGCATTACGTTATATGCTTGTCTCTAGGAGCCATGTATAAAGCTTACATATAGCGATAACATTTTGTAAGACACTTCCAGGTTTGAATTTATCATTGATcgttgttttctttcatattttatataaaagctGTTCATCAAAAAACGgttgtggtttaatttttttcgtaaggaaaatgtttaaattttgaAGTTAACTGTACAAACTGGTCTTTATtcagtaattttattttaattaatgcagtTGCTTATTACTATACTTGTACTCACCTAAAATGTGCAGTGCTGATATCTTGCACAAATTTGGTAGCATGAAAAGATCCTTCCtttttgccattgttttttatttttttatttgtagagTGATTTATCAGTTACATTGTTATGAAGCACATTTAGCCTTCACTCTCTGAACCCTGGTTATAACCACAAGTGTATGATTATGAATTATGGCTTAACTGGATAAGCATATAATTTCTGCTGCAGATTTAAgaggaatacaaatataattaagtttttttATAACGGGAGCAATAGTTAGTAACCCATCAATGGAGTTTGATTATATGCTTTCTGGGATTTTCGTTTTTTCCATCCGTGCCATATGGCTTAATAAAGACACTGACTGCAATTTGGGGACGTTATAAACATGTCTCTCCAAAATCTGCTTTTCAAGACTTACATTTTTCTATGAGTGTGTGCTTGCAGGTTCATCCGCGTGAGTTTCAGGTCTCTCTGGTACCCCTTGACCGATCTGTACTTCAGCAGTTTTCCTGGAATTCAGAGAACCTGTCAGCAGCAACACTGTGCTGACTGCTGCAGAAAAGCAACAGGACATGTGGTGTGCAGGTGAAAGTGAAGGATGCCAAAGAAAACAGTGTTCTCCATAGAATGCTCTGCCCTGTTCCAGCAGGACTAGCTTTATATACCACTGTTCAGTCTGATGAATATGCCTGCTTCAGAGTGTATCTTAATTGTTGGTGTTTTCAGACCAGTAAACTTTTTCTCAGAAGGTGAAATGTTCTGAATTGTGTGAGACATTCCtttattcaaaaacataaaagaa

Function

symbol description
cwc15 Predicted to enable RNA binding activity. Predicted to be involved in mRNA cis splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 2 spliceosome. Orthologous to human CWC15 (CWC15 spliceosome associated protein homolog).

NR:

description
PREDICTED: protein CWC15 homolog

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
K12863 CWC15; protein CWC15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016418 True 2406 mRNA 0.42 7 19366084 19375596

Neighbor

gene id symbol gene type direction distance location
AMCG00016420 mre11a coding downstream 49407 19281702 ~ 19316677 (-)
AMCG00016419 NA coding downstream 86416 19277298 ~ 19279668 (-)
AMCG00016414 NA coding downstream 160490 19184938 ~ 19205594 (-)
AMCG00016410 NA coding downstream 204356 19155334 ~ 19161728 (-)
AMCG00016409 NA coding downstream 222566 19109142 ~ 19143518 (-)
AMCG00016424 sesn3 coding upstream 2404 19378000 ~ 19406939 (-)
AMCG00016423 fa76b,fam76b,LOC106603374 coding upstream 51859 19427455 ~ 19437740 (-)
AMCG00016425 mtmr2 coding upstream 70958 19446554 ~ 19455857 (-)
AMCG00016426 pde2a coding upstream 84697 19460293 ~ 19498100 (-)
AMCG00016428 NA coding upstream 283820 19659416 ~ 19698145 (-)
G13414 NA non-coding downstream 107527 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 109165 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 112670 19165586 ~ 19253414 (-)
G13366 NA non-coding downstream 277452 19088224 ~ 19088632 (-)
G13341 NA non-coding downstream 288261 19077368 ~ 19077823 (-)
G13615 NA non-coding upstream 627553 20003149 ~ 20004940 (-)
G13680 NA non-coding upstream 940146 20315742 ~ 20316579 (-)
G13762 NA non-coding upstream 1092650 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 1111285 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 1219733 20595329 ~ 20598765 (-)
G13367 NA other downstream 260703 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 1824742 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 2099337 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 2496082 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 2504905 16858541 ~ 16861179 (-)
AMCG00016453 NA other upstream 753312 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 1240913 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 1290546 20666142 ~ 20683024 (-)
G13962 NA other upstream 4079496 23455092 ~ 23455811 (-)
G13969 NA other upstream 4323553 23699149 ~ 23700255 (-)

Expression


Co-expression Network