AMCG00016422


Basic Information

Item Value
gene id AMCG00016422
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19438593 ~ 19444885 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016422
TCTGACGCCATCACGTTGCACTGAATTTACGCGGCAGTGTTGATGCAGTTTCCTGTGCTGTCGTTGTGCGGCTAAATTGGCTGCAAATTTCCATTTAATAACAATAGTCATCTGTAAATGATAtacttaaaaacattaaaaaaacaaaaatgcatatttaatggCGACAACTGCAACAGCACCCGGAGCATCTTACACACTGGAGACGCTGCAGGACCGGCTGACCGGACGCTGCCATGTGCCGGTGATGTCTGACACTGTGTCCCTGCCTTCATATATGGACTACCCTTCAGAGCGCCCCTTCCTCAATGCCAGCCTGCGGCGATCCCCTAGCAGGCCGGTCAAAGCCTACCCTGAGAGCAGCAGCACAGCGATCTTGTCTGCACTGAAGAACCTGCAGGAGAAGATCCGGCATCTAGAGCTGGAGCGGACACAGGCGGAGGAGAACTTACAGCGTCTGTCCCGGGAGACCTCTCGGTACAAGAGGGTGCTGGAGCGCGAGAAAGAGTCCAATGATGAGAGCTACACCCAGGCTGCCCGCCACAACCAGGAGCTGGCGACACAGCTGGTTGCTGCCGAGTCGCGCTGTAATCTCCTGGAAAAACAGCTGGAGTACATGAGGAAGATGGTGCGCAATGCAGAGTCGGAGAGGACCGCAGTGTTGAAGCAGCAGGTATCATTGGAAAGAGAGAGATCTGCTGACCACTTGGACGTGCGGGCCAAGTTTGAGAAGTTAGACCTGCTGGAACAGGAGTACCTGAAGCTCACGGAAACACAGAACCTGGCAGAGAATAAAATCCGTGAGCTGGAAATTAAGCTTCAAGAGGAGGAGCATCAGAGGAAGCTGGTTCAGGACAAAGCTGCCCAGTTACAAACCGGGCTAGAGGCCAACCGAATCCTGCTCCAGTCAGTGTCTCCGCTTCCTCACAAGACGACAAAaacgaagaagaagaaaaagcaacagGCTAAAAAGGTCCCACAGCAACACCATTCACATGCCGAGCCTCATTACAGACTCAGCCTGGGGGACGTGCCATTCGTGGCAGGGAAGTCCACAGCCTCTAGTCACTCCGTCCGTGCCAACGTCCAGCACGTCCTGCACCTCATGAAGCAGCACAACCGGCAGCTGTGTAACAACCGCGTGCTGAGCGAAACCCCATTGGCTAGGAAGTCCTCCTCCGTGACTGTTTCCGCCAATGGGAAGAAGCCTGGCCACAGCTCCAGCACTAGCTCCGCCtcttcctgctcctcctcctgtAGTGAAGAGCTGGCTGAGCTGCTGCTGGCCCTGCAGGACGAGTTTGGACACATGAGCTTTGAGCACCAGGAGCTGGTGAAGCAGACACAGGAAGCCCGGTCAGACCGCCTACGCCACGACCTGGAGAGAGAGCTGGAAGGCCTGGTCAAGAGGATGGAGAGCAAGGGGGAGCAGATCGCCAAAGTCCGCCGGCACCAAATTCAGGTGAGCCGGCAGAGGAGTGCAGGGGAGGTCAGGGGGCGGCAGGGCGGGCGAGGGGAGGTGAAGGTCACCACCACAGTGACCACACGGGGCCCGGCAGCAAGGACAGTGAAGGTGAAGCCGGGGGAGAAGAGCAAAGATAGCCTGCGTCTCCTCAGGGACATGCAGAGCCTGCAGACCTCCCTGTGCAGAGACCAGATCAGCTGGGACTACTGA

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG:

id description
K16762 CEP57; centrosomal protein CEP57

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016422 True 1675 mRNA 0.56 11 19438593 19444885

Neighbor

gene id symbol gene type direction distance location
AMCG00016417 NA coding upstream 76123 19339826 ~ 19362470 (+)
AMCG00016421 NA coding upstream 112886 19324580 ~ 19325707 (+)
AMCG00016415 NA coding upstream 116312 19316828 ~ 19322281 (+)
AMCG00016416 NA coding upstream 186739 19239187 ~ 19251854 (+)
AMCG00016413 NA coding upstream 201500 19224261 ~ 19237093 (+)
AMCG00016432 clpb,LOC107568463,LOC108261447,LOC102793156 coding downstream 313442 19758327 ~ 19799814 (+)
AMCG00016430 NA coding downstream 366517 19811402 ~ 19814610 (+)
AMCG00016431 anapc15 coding downstream 421393 19866278 ~ 19869018 (+)
AMCG00016438 NA coding downstream 440873 19885758 ~ 19898268 (+)
AMCG00016439 pola1,LOC107666635,LOC107705179,LOC107721886,LOC107586771,LOC104949401 coding downstream 466955 19911840 ~ 19938673 (+)
G13415 NA non-coding upstream 176181 19262099 ~ 19262412 (+)
G13411 NA non-coding upstream 182661 19255725 ~ 19255932 (+)
G13364 NA non-coding upstream 276781 19161582 ~ 19161812 (+)
G13342 NA non-coding upstream 333065 19091241 ~ 19105528 (+)
G13323 NA non-coding upstream 612062 18783448 ~ 18826531 (+)
G13490 NA non-coding downstream 13164 19458049 ~ 19462968 (+)
G13491 NA non-coding downstream 18596 19463481 ~ 19463953 (+)
G13493 NA non-coding downstream 23695 19468580 ~ 19468788 (+)
G13494 NA non-coding downstream 24750 19469635 ~ 19470098 (+)
G13495 NA non-coding downstream 25290 19470175 ~ 19470456 (+)
AMCG00016407 NA other upstream 964904 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 1839012 17562418 ~ 17599581 (+)
G13012 NA other upstream 2316661 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 2952590 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 4655058 14745316 ~ 14783535 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 430171 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 2337221 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 4421382 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 4493166 23938051 ~ 23945024 (+)
G14057 NA other downstream 4635132 24080017 ~ 24110182 (+)

Expression


Co-expression Network